PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre01.g052300.t1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | E2F/DP | ||||||||
Protein Properties | Length: 514aa MW: 51684.8 Da PI: 4.8624 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.6 | 1.9e-27 | 92 | 157 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL++lt+kfl+l++++++gi++ln++a++L +v ++RRiYDi+NVLe+++liekk+kn+irwkg Cre01.g052300.t1.1 92 RYDSSLGMLTKKFLNLINTARDGILDLNQAAETL---KV--QKRRIYDITNVLEGVGLIEKKSKNNIRWKG 157 6899******************************...88..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-28 | 89 | 158 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.63E-17 | 92 | 155 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.0E-34 | 92 | 157 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-24 | 94 | 157 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 9.68E-30 | 170 | 276 | No hit | No description |
CDD | cd14660 | 4.87E-44 | 171 | 277 | No hit | No description |
Pfam | PF16421 | 1.4E-28 | 174 | 275 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MSKRHADTSY EASAKRHQAA RGDDSGDDDE DYEPRGRHRG ADPDDQEQSS YGGGDEDDED 60 RQSSEQHTAS RSVKRKAGRA AGSPGSHTGG CRYDSSLGML TKKFLNLINT ARDGILDLNQ 120 AAETLKVQKR RIYDITNVLE GVGLIEKKSK NNIRWKGAGD GGRGGDADPD LDRLRSDMSK 180 LDEQERELDD NIRFMTSAIQ ALSENPLNKP RLYVTDEDVM GLPCFANDTI FAVKAPPGTT 240 LEVPDPREAA DPRDGQMRYR IVLRSTKGPI DVYLVQHTNN VGTTSQQGQQ GGAGGGQQPS 300 ASAEPAGSTV GPAGAAGGAM SGGAMGAPAV APAASGAAAA AAVGGAPAAA GPAGVAPAAA 360 AAAAAPAAAA AAEPVPSAVK QEQQPPAVRA PVPGLAGQGV ISPAAFHFMP QSGTPLSAMA 420 GGASGHNFFA PMSPNAVDLA ALAASFGGAG PGGALGRVSG LIPGGGPAGH GGLGGHGGVE 480 LDPGQWFDAP GDGAGGGAAA YFGADGDNFF AEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-23 | 92 | 159 | 7 | 75 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | LKVQKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre01.g052300.t1.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ417492 | 0.0 | DQ417492.2 Chlamydomonas reinhardtii E2F1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001689788.1 | 0.0 | E2F family transcription factor | ||||
TrEMBL | A0A2K3E855 | 0.0 | A0A2K3E855_CHLRE; Uncharacterized protein | ||||
STRING | EDP09526 | 0.0 | (Chlamydomonas reinhardtii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3258 | 13 | 14 | Representative plant | OGRP1225 | 17 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 2e-65 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Cre01.g052300.t1.1 |