PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cre01.g033900.t2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
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Family | SBP | ||||||||
Protein Properties | Length: 1121aa MW: 107976 Da PI: 7.246 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 80.3 | 2.9e-25 | 50 | 122 | 1 | 73 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +Cqv gC+adl+++k+y++r+++Ce h kap+ ++g+ rfC qCs+fh++ fD ++r+C ++L+k + r Cre01.g033900.t2.1 50 RCQVGGCTADLTDVKKYFQRYRICERHLKAPSLKMDGRAVRFCDQCSKFHDIGAFDGARRTCTEKLEKTRQAR 122 6*****************************************************************9876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.0E-26 | 44 | 111 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 21.88 | 48 | 125 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.68E-24 | 49 | 122 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.4E-26 | 51 | 122 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1121 aa Download sequence Send to blast |
MDEDYDTANM HNYAAGSNVA RWGRLEELDP GDEAFLKSLE RKQQLRKPLR CQVGGCTADL 60 TDVKKYFQRY RICERHLKAP SLKMDGRAVR FCDQCSKFHD IGAFDGARRT CTEKLEKTRQ 120 ARVVRRMRRG GGGGGGGGAG GGGGGGGDGE GSGRRGRRQQ RGEGGSDGGG GGEGSSSDGG 180 DGDGDGDGDG DGGGSGSGRY GGASGSGSEH AVKRRRWEAA EDEDRGGGDD YDMPADGMHG 240 SGGLSGGGLG GGLGGGGLGG GLGGGLGGGL GGGGGSVYGS DRAAAATAAA DRELLPGGAD 300 NRSLRDFDGL AAAGAAGTAP PEPLDLRLPP MGLAGGGLLQ PPLLPPADLL GRGGGGGSGS 360 GGLEPMGGLL QALNGGGGGG SMSLDLEAPL LGMHASSPAS LGGGGGGGGG GAGGGDLGRS 420 LLLSRTSLLL PGGGAGAGAG GINGGGGGHG RLLGGDDGVM GAVEAGLQRP LSATRLLLRG 480 LSGVPLGRSG GSSNLSAEAV AAAAAGLAAA VAGTGGGGGG GAGGRGRGSG GGGGGVRSGG 540 GATNVVPGGG KPDDVHMAGS DDDDVVIVSD AAAIAAARQA RATRPGSGGS NAAAAAAAAS 600 AGAAAGGNGG DALDGAAAGA RASQTHRLAD LPQPGGGAAG GGGGAAGGGG APQVPSPAPP 660 LTSPVAAAAA SAAQRPPPPA QPSPGLGEAL QLQLQQLQLP GRATAHLLGL VQALDEAGAA 720 PEDVAAVLAR VPLMLVRHRT AAAAAAVATD GVNGNGNGAG KGNGNGAVDG GLSGGGGGGS 780 GAGAGDVVVK VERDVEEGGG GGVGPELLLR LRHQQQQQQQ QQQRQQQLRD ELLGRNDGGR 840 ASEYSPRRPA AVAALTGGGF GGGGGGGAAA PDDVYTACSQ QLMARQLGVR INGYPSRPSP 900 PPSPPPLAQQ QQQQKQQQVQ QHKQQQQQQL QQQLQQLQQL QKLQQLHNHQ QQQPQQQQRP 960 LQPPARQLSG ASNLHQELRA QMERLAPAGG ASGAGERGGG GGGGGGGGQM YRSLPALSGR 1020 QQLLQPDQAP GLLLQLGGGG GGGGGGGGGA AGPAAEFGRS RNEVVSLGDG CGGDGGGGGG 1080 GAGGGGGGGD GLEVQYRYLS VMQERLLRQL GLPKQAWQQQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-16 | 51 | 122 | 11 | 82 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 128 | RQARVVRRMRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cre01.g033900.t2.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3E6X2 | 0.0 | A0A2K3E6X2_CHLRE; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 3e-18 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Cre01.g033900.t2.1 |