PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre01.g033900.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

SBP

Protein Properties

Length: 1122aa MW: 108104 Da PI: 7.246

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre01.g033900.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	80.3	2.9e-25	50	122	1	73
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------ CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerr 73 +Cqv gC+adl+++k+y++r+++Ce h kap+ ++g+ rfC qCs+fh++ fD ++r+C ++L+k + r Cre01.g033900.t1.1 50 RCQVGGCTADLTDVKKYFQRYRICERHLKAPSLKMDGRAVRFCDQCSKFHDIGAFDGARRTCTEKLEKTRQAR 122 6*****************************************************************9876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-26	44	111	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	21.88	48	125	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.68E-24	49	122	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.4E-26	51	122	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence Send to blast
MDEDYDTANM HNYAAGSNVA RWGRLEELDP GDEAFLKSLE RKQQLRKPLR CQVGGCTADL 60 TDVKKYFQRY RICERHLKAP SLKMDGRAVR FCDQCSKFHD IGAFDGARRT CTEKLEKTRQ 120 ARVVRRMRRG GGGGGGGGAG GGGGGGGDGE GSGRRGRRQQ RGEGGSDGGG GGEGSSSDGG 180 DGDGDGDGDG DGGGSGSGRY GGASGSGSEH AVKRRRWEAA EDEDRGGGDD YDMPADGMHG 240 SGGLSGGGLG GGLGGGGLGG GLGGGLGGGL GGGGGSVYGS DRAAAATAAA DRELLPGGAD 300 NRSLRDFDGL AAAGAAGTAP PEPLDLRLPP MGLAGGGLLQ PPLLPPADLL GRGGGGGSGS 360 GGLEPMGGLL QALNGGGGGG SMSLDLEQAP LLGMHASSPA SLGGGGGGGG GGAGGGDLGR 420 SLLLSRTSLL LPGGGAGAGA GGINGGGGGH GRLLGGDDGV MGAVEAGLQR PLSATRLLLR 480 GLSGVPLGRS GGSSNLSAEA VAAAAAGLAA AVAGTGGGGG GGAGGRGRGS GGGGGGVRSG 540 GGATNVVPGG GKPDDVHMAG SDDDDVVIVS DAAAIAAARQ ARATRPGSGG SNAAAAAAAA 600 SAGAAAGGNG GDALDGAAAG ARASQTHRLA DLPQPGGGAA GGGGGAAGGG GAPQVPSPAP 660 PLTSPVAAAA ASAAQRPPPP AQPSPGLGEA LQLQLQQLQL PGRATAHLLG LVQALDEAGA 720 APEDVAAVLA RVPLMLVRHR TAAAAAAVAT DGVNGNGNGA GKGNGNGAVD GGLSGGGGGG 780 SGAGAGDVVV KVERDVEEGG GGGVGPELLL RLRHQQQQQQ QQQQRQQQLR DELLGRNDGG 840 RASEYSPRRP AAVAALTGGG FGGGGGGGAA APDDVYTACS QQLMARQLGV RINGYPSRPS 900 PPPSPPPLAQ QQQQQKQQQV QQHKQQQQQQ LQQQLQQLQQ LQKLQQLHNH QQQQPQQQQR 960 PLQPPARQLS GASNLHQELR AQMERLAPAG GASGAGERGG GGGGGGGGGQ MYRSLPALSG 1020 RQQLLQPDQA PGLLLQLGGG GGGGGGGGGG AAGPAAEFGR SRNEVVSLGD GCGGDGGGGG 1080 GGAGGGGGGG DGLEVQYRYL SVMQERLLRQ LGLPKQAWQQ Q*

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence Send to blast

MDEDYDTANM HNYAAGSNVA RWGRLEELDP GDEAFLKSLE RKQQLRKPLR CQVGGCTADL  60
TDVKKYFQRY RICERHLKAP SLKMDGRAVR FCDQCSKFHD IGAFDGARRT CTEKLEKTRQ  120
ARVVRRMRRG GGGGGGGGAG GGGGGGGDGE GSGRRGRRQQ RGEGGSDGGG GGEGSSSDGG  180
DGDGDGDGDG DGGGSGSGRY GGASGSGSEH AVKRRRWEAA EDEDRGGGDD YDMPADGMHG  240
SGGLSGGGLG GGLGGGGLGG GLGGGLGGGL GGGGGSVYGS DRAAAATAAA DRELLPGGAD  300
NRSLRDFDGL AAAGAAGTAP PEPLDLRLPP MGLAGGGLLQ PPLLPPADLL GRGGGGGSGS  360
GGLEPMGGLL QALNGGGGGG SMSLDLEQAP LLGMHASSPA SLGGGGGGGG GGAGGGDLGR  420
SLLLSRTSLL LPGGGAGAGA GGINGGGGGH GRLLGGDDGV MGAVEAGLQR PLSATRLLLR  480
GLSGVPLGRS GGSSNLSAEA VAAAAAGLAA AVAGTGGGGG GGAGGRGRGS GGGGGGVRSG  540
GGATNVVPGG GKPDDVHMAG SDDDDVVIVS DAAAIAAARQ ARATRPGSGG SNAAAAAAAA  600
SAGAAAGGNG GDALDGAAAG ARASQTHRLA DLPQPGGGAA GGGGGAAGGG GAPQVPSPAP  660
PLTSPVAAAA ASAAQRPPPP AQPSPGLGEA LQLQLQQLQL PGRATAHLLG LVQALDEAGA  720
APEDVAAVLA RVPLMLVRHR TAAAAAAVAT DGVNGNGNGA GKGNGNGAVD GGLSGGGGGG  780
SGAGAGDVVV KVERDVEEGG GGGVGPELLL RLRHQQQQQQ QQQQRQQQLR DELLGRNDGG  840
RASEYSPRRP AAVAALTGGG FGGGGGGGAA APDDVYTACS QQLMARQLGV RINGYPSRPS  900
PPPSPPPLAQ QQQQQKQQQV QQHKQQQQQQ LQQQLQQLQQ LQKLQQLHNH QQQQPQQQQR  960
PLQPPARQLS GASNLHQELR AQMERLAPAG GASGAGERGG GGGGGGGGGQ MYRSLPALSG  1020
RQQLLQPDQA PGLLLQLGGG GGGGGGGGGG AAGPAAEFGR SRNEVVSLGD GCGGDGGGGG  1080
GGAGGGGGGG DGLEVQYRYL SVMQERLLRQ LGLPKQAWQQ Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-16	51	122	11	82	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	128	RQARVVRRMRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre01.g033900.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3E6Y6	0.0	A0A2K3E6Y6_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101
Representative plant	OGRP4828	13	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-18	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Cre01.g033900.t1.1