PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g023100.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family ERF
Protein Properties Length: 385aa    MW: 41406.8 Da    PI: 9.8459
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g023100.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-11197241150
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                         s+y+GV++   ++rW+A+ r    ng  k  slg f+ +eeAa+a+++++
  Cre01.g023100.t1.1 197 SRYRGVHQTFPTKRWEAQFRR---NG--KPTSLGCFDHEEEAARAYDKMM 241
                         79****************555...54..*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-10197243IPR016177DNA-binding domain
PfamPF008473.8E-7197242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-8198249IPR001471AP2/ERF domain
SMARTSM003806.4E-5198266IPR001471AP2/ERF domain
PROSITE profilePS5103212.036198260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVEVAQPPL KQDHVPAPVE AGAVTQQEQR PPLAAQPDAS TSAPAQPMLL RPRLPSRRFT  60
LAELIQLGGG FAAKEQLDML QNRLRQGAVL FQPTICKPRS TTLRELEYLE EMGITVPDWQ  120
TLKAPAPVSV KTNRPINMHS NPMLRGAGGR SKPSAPPHHG HQLGGSGGPA GKLAGGGIKL  180
LRAVKSKANG SGRTYTSRYR GVHQTFPTKR WEAQFRRNGK PTSLGCFDHE EEAARAYDKM  240
MLWCELHNAA GVKSGITNFD PQEYEKEFAW LQSITQDELI ETLRSEGRRQ AAHRMMRQKR  300
EGQTDANSDD YEDSEGGGDG PGGRGGGGRG GRSGSAAPSA PPPPAAPPQI TNLLQLKPEL  360
GLGLGLQPGP AAAARRSCCS SWAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre01.g023100.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002956385.11e-103hypothetical protein VOLCADRAFT_97414
TrEMBLA0A2K3E6940.0A0A2K3E694_CHLRE; Uncharacterized protein
STRINGXP_002956385.11e-102(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.13e-09target of early activation tagged (EAT) 3