PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g009650.t1.2
Common NameBUG25, CHLREDRAFT_19751
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family AP2
Protein Properties Length: 1685aa    MW: 166861 Da    PI: 6.9114
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g009650.t1.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.2e-1314031454155
                 AP2    1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                          s+y+GV++++++grW+A+I++    + + ++++lg +  +  Aa+a++ a++k +g
  Cre01.g009650.t1.2 1403 SQYRGVTRHRRSGRWEAHIWV----KeMGRQVYLGGYEEEAHAAEAYDVAALKCKG 1454
                          78*******************....3344**********99**********99877 PP
2AP229.61.8e-0914991548155
                 AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                          s y+GV+ ++ +grW+++I  p   g +k+++lg f  + +Aa+a+++   +l+g
  Cre01.g009650.t1.2 1499 SSYRGVTAHP-SGRWESRIGIP---G-SKHIYLGLFEGERDAAAAYDRSLVRLKG 1548
                          67********.7*********8...3.6**********99*******99988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575132No hitNo description
CDDcd000182.67E-1414031464No hitNo description
PfamPF008471.2E-814031454IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1114031463IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-1614041464IPR001471AP2/ERF domain
SMARTSM003801.1E-2214041470IPR001471AP2/ERF domain
PROSITE profilePS5103217.20114041464IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1314991557IPR016177DNA-binding domain
CDDcd000183.69E-1414991555No hitNo description
Gene3DG3DSA:3.30.730.104.8E-1415001557IPR001471AP2/ERF domain
SMARTSM003808.0E-2015001562IPR001471AP2/ERF domain
PROSITE profilePS5103214.90815001556IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1685 aa     Download sequence    Send to blast
MASRTHGYHP DAAALDDEGC GGCGAAAGGG ACFSPSGRCN SGCLAALADA FLSGSSDAVG  60
ATCGGGSGGG GGGGGGWVLG SNTHRLYSAG SLELRSLDEH ALNHGSGGGG GAAAATMAAP  120
SPFGGPSAPC CYLHPSPRGA DGYDGDGGFG GRGDDLCFDP GCGVAAAAED GGCAAYLSMH  180
RPSAAAAAAS AIASAAAACA PRTRSSSGSA GVAVRASRSA SPQLRCPFAA AAVAGFDGGL  240
DTAAGGNGSA AGIGAAPPAG GSADDTLQCG EALTSEESSG DGADIAAAIC ATATAAAAGA  300
AGGDCKAAYY YSSSPAPPSS AAAAAPAVTA AALPPQALHA SPAPHHHALP AHPPAAPPCA  360
APDPPMQRMT PPPPPPPPPP HVAVAGTGAP PPPGYYHHYP GAPPPTPQMY APPPPPVPAS  420
VPPPVPYAQP PPPYSHYDNR PPPYGYTSPP PPVTYGHSST GGSAGEHATA AGNPPPLPPP  480
YVTAAAGSPT YPPGPHPHSH HHHHHHDHHH HHQQQYPPVV PPPYHNIGPP PPTTTYGYGY  540
PPAAHYSHAH SHAMPPPPHQ PHHQPHHHQP HGITMMPAPP QPPPPPHGYY GQPPPLPYHM  600
PPPPYYMYGE RPGPPTAPGD KYNSQAHRGA APAADPCAHC GAAGSCLCHV ERRESAGSSF  660
TAGGAAPSVA KSQLPPPGSV PLPPCGSVPL PPCGSVPPPP PTPLRVAASI TTELSVDAPQ  720
PQHHSQHLSP QHSQPAPQQP APSPFGSAAG AARTALLGAA TPASAAPTCL PRPAGPSPTA  780
SSNHSAMPPQ AQAQAPPPAH QHQPQQLQQA QSYSAGPDAA RTIAPPQQAP AYCYTRASNV  840
SSASAVGVTA IPRPEVPHTH AAPWQQAHSC PPPHVHPPQQ LQHPQHQRPC LPVPVPPPPK  900
WRQDRPTAAN TTATDGSNVA SAGFASAAAT ATVGYRPRQS SALSDCSIAL RDLLCGGGGG  960
GEKGVAAGYI SRRGSGAVTP GLVQQLTGGG DSDAEGMRVA MAALLSGGAV GAAEEDEATA  1020
AADWLQLSSF HTDGDGDCDG GSGDGSSSGR AHAAPAPAAT LVYGRTTSSS MVPCSDLYAY  1080
NNTYAYTRPA AGAAAATTAA VFADGSSISG AAAPAAGVMY PLHTLCSGGS ADVGVTAGPG  1140
ATPPGLASDP YNHSSSGVPA PDASVGTLPA LQQTGSSGRA TADVAQALLP SAVASAEIAS  1200
AAMGQQPAAT LVARRSSGGP KPHASRGAPA YQAAAEIAAA PVVAAAPPAP ALPRARAPKR  1260
SAAVAALTQI AAHTRSDFSC GGGSSAASGD DNYSASEAEE DEEEEADIEI EEEEEEPQPP  1320
PRRSSGGAKA RGGARAAGGD ASSSRSRKRR AVSAAAAASA APVQPAAVMA GTVQAAMAAG  1380
ATGAAGTGGA AEEEDGGCKK RSSQYRGVTR HRRSGRWEAH IWVKEMGRQV YLGGYEEEAH  1440
AAEAYDVAAL KCKGAKAGVR TNFELGRYSG LLASLPHISL EELIMAVRRQ SQGFSRGSSS  1500
YRGVTAHPSG RWESRIGIPG SKHIYLGLFE GERDAAAAYD RSLVRLKGPT AATNFSLSEY  1560
RSELSEFHVY GNASVLRDAR LASVTAGSGP DFEKWIKSGF GAFPHLSAAD FGASAAAAAT  1620
GAAPAPGASG SGSVEAAPRT AGPSTASGDA SPAVAAAAVA HSPSPIAAVM AMAAASAAVA  1680
AGGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre01.g009650.t1.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001700293.10.0basal body protein
TrEMBLA0A2K3E5D60.0A0A2K3E5D6_CHLRE; Uncharacterized protein
STRINGEDO982600.0(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.37e-32related to AP2.7
Publications ? help Back to Top
  1. Merchant SS, et al.
    The Chlamydomonas genome reveals the evolution of key animal and plant functions.
    Science, 2007. 318(5848): p. 245-50
    [PMID:17932292]