PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cre01.g009575.t1.1
Organism
Chlamydomonas reinhardtii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Family AP2
Protein Properties Length: 1736aa    MW: 172156 Da    PI: 6.9431
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cre01.g009575.t1.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.3e-1314561507155
                 AP2    1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                          s+y+GV++++++grW+A+I++    + + ++++lg +  +  Aa+a++ a++k +g
  Cre01.g009575.t1.1 1456 SQYRGVTRHRRSGRWEAHIWV----KeMGRQVYLGGYEEEAHAAEAYDVAALKCKG 1507
                          78*******************....3344**********99**********99877 PP
2AP229.51.8e-0915521601155
                 AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                          s y+GV+ ++ +grW+++I  p   g +k+++lg f  + +Aa+a+++   +l+g
  Cre01.g009575.t1.1 1552 SSYRGVTAHP-SGRWESRIGIP---G-SKHIYLGLFEGERDAAAAYDRSLVRLKG 1601
                          67********.7*********8...3.6**********99*******99988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-1114561516IPR016177DNA-binding domain
PfamPF008471.3E-814561507IPR001471AP2/ERF domain
CDDcd000184.21E-1414561517No hitNo description
SMARTSM003801.1E-2214571523IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-1614571517IPR001471AP2/ERF domain
PROSITE profilePS5103217.20114571517IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1315521610IPR016177DNA-binding domain
CDDcd000184.05E-1415521608No hitNo description
PROSITE profilePS5103214.90815531609IPR001471AP2/ERF domain
SMARTSM003808.0E-2015531615IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-1415531610IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1736 aa     Download sequence    Send to blast
MASRRNSCCR LELAASLEGA LAAAAVVVAA AATAATAATT GGSGSRGNDP GGDISSSRAA  60
ASGAAGGGMT RAGSLAGGGL CVSLSGRLDS GCLARLLSDG MLFGDGGGGG GPSGGSGGGG  120
GGGWTPGDGG ALLRHYSARS LEAELRVDQL LASAGPCGGG GGGGGGGDGA GGGGRDDALA  180
AAQSPSSPLP AGLVVTPSAY FCPSPTSPPP PPRAEAAGGE AASGPGGGRR QPQPQPQTQT  240
QPQPPPPPPP VVVVRTDSTF SVAASAAANA FAMEPEDATT AAVAAAAAAA AAAARGDGSS  300
SSARRLAGGG GGGGGPAVIT LCCSEALMEG ASSAAAAGSD RSQLGCAVAA VGVAVGAAVA  360
SAQAADAMAQ AHATAADAPA ADAHAQQPLG SDRVSMGPPP PPPPAAPVAS PCNRAVMQPP  420
PPPPPQAQPY AAAQPPSHGP VAAAAAHPWH QQHPHPNYHS HPHPNPHHPH MGGPQPEPPL  480
PPPPHGGYGY GYGYPPPPWH YYEPHHAMPP VPPLTAPLPY ARPPPPPYAY APPPAPPRSH  540
GGMMPPPPQP PPPHGYYAPP PQPPPQYNQP PPPYVYGERH SHLYQQPYYP APDQQPHQQT  600
PYEYGNGAVD GAGGACALCD GGSWCPYHVP RRESSGSTVN NGTGSHRRLS TGGCRGAAGG  660
AAMVAVPVGT AGDAWPAAAA AGSVPQCGSL PSPRPPTRLI ATASVGSGVI NGQGRGGGCG  720
SCAEASRPTA AEQTSAVSPP VPPPIAPASD QQQYEQPPMP TSVAGGAGGP AGAATATATA  780
TDNDAAHAAH AQRPAGDEGP TAARQPRRCD DYYDYWRYGE GERHRYPLMY QQQPPPPPQQ  840
HPPQHPPHPY PYLPIHPHHQ LHHHKSYHQL HLPQLHPHQQ AAPPPAGYLQ LPPPPPLFIT  900
PPPPAQPAQR DEHGDLRAVP NSGAGPATTV NQAPPADGAA ATATTAPTAT ATTAVATAGY  960
RPRQSSAFSD CSIALRDLLC RSGSVNAAGG GGGEVFSRRG SGAVTPGLVQ QLTGGGDSDA  1020
EGMRVAMAAL LSGGAVGAAE EDEATAAADW LHNSNGNRNG GRGVNGDGQH GASSVPPPQP  1080
PPPHPCKAPH GYGAYLRRAA AAAAAAAAGA MQGCSSASAA TATAAATGSD AAAAGGGTMY  1140
PLHVLCGSGS VGTARNESSG GGNSSCRSAL PTAFGSELSG AGAAQPPYNH PGCAVGDGTM  1200
QPPSTAAGRT ADATANETHP RHVLLPQTSA TPLGGASPGQ AQTQMEARTQ RSVPESEAPV  1260
AAASPLAPAP PRARAPKRSA AVAALTQIAV HARGGFSCGG GSSAASGDDD DYSASEADED  1320
EEEEDEDEED EEMEWAVETP QSQRGTVSTA GHRGSAGVSS SSSKGRQRAA TVSKHARRGA  1380
VAGDGAAGGG SGSCSGKRRA TGGGASTAAL PKPLSVVVQQ AVAAAVNGAA GSLAGAAGAG  1440
GAGEKEEDGG CKKRSSQYRG VTRHRRSGRW EAHIWVKEMG RQVYLGGYEE EAHAAEAYDV  1500
AALKCKGAKA GVRTNFELGR YSGLLASLPH ISLEELIMAV RRQSQGFSRG SSSYRGVTAH  1560
PSGRWESRIG IPGSKHIYLG LFEGERDAAA AYDRSLVRLK GPTAATNFSL SEYRSELSEF  1620
HVYGNASVLR DARLASVTAG SGPDFEKWIK SGFGAFPHLS AADFGHGGGT TTSIDGGGPD  1680
SPVGVGSSGA TDAGEPTPAA ASASAAAHSP SPIAAVMAMA AAASAAVAVS PTGRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCre01.g009575.t1.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3E5F50.0A0A2K3E5F5_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-31related to AP2.7