PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre01.g003376.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

MYB_related

Protein Properties

Length: 761aa MW: 82445.2 Da PI: 6.6688

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre01.g003376.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	690	737	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +WT+ ++ lv a kq +++ +W+++a+ ++ gR+ qc r+ + Cre01.g003376.t1.1 690 PWTEAQELALVAALKQCPKElgaeRWDAVAKLVP-GRSKAQCFKRFKEL 737 8***************99**********.*****9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46565	5.5E-19	110	190	IPR001623	DnaJ domain
Gene3D	G3DSA:1.10.287.110	4.0E-20	112	213	IPR001623	DnaJ domain
SMART	SM00271	6.3E-14	118	186	IPR001623	DnaJ domain
PROSITE profile	PS50076	17.041	119	194	IPR001623	DnaJ domain
CDD	cd06257	1.46E-13	119	183	IPR001623	DnaJ domain
Pfam	PF00226	4.6E-17	119	191	IPR001623	DnaJ domain
PROSITE pattern	PS00636	0	171	190	IPR018253	DnaJ domain, conserved site
PROSITE profile	PS51293	8.242	482	532	IPR017884	SANT domain
SMART	SM00717	1.2E-5	483	535	IPR001005	SANT/Myb domain
CDD	cd00167	1.34E-4	486	525	No hit	No description
SuperFamily	SSF46689	2.08E-7	486	527	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.134	683	742	IPR017930	Myb domain
SMART	SM00717	4.9E-7	687	740	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.38E-8	687	737	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-6	689	737	IPR009057	Homeodomain-like
CDD	cd00167	1.73E-6	690	737	No hit	No description
Pfam	PF00249	6.2E-8	690	737	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MGFQLSLRSS VRFIEYDEDN RPNGYGGREV VCHVAGPIPS PVMKDPAGYY FHLRALQQAG 60 LWEDPAEAAA EAAAAAAEAG AAASPSGAAA SADDKPPPGV EWKGSKARKR KQVKKKETDP 120 YALLGLSNER WTATEAQIRA AYRKVCLEAH PDKALVNVTD EAEKERIQDH FKLIQDAYDT 180 LSDKDKRREF DSIDEFDDTL PTQCDPKDFF KVFGPAFRRN SRWSEKEGVP DVGDEATSWE 240 DVCKFYDFWY TFKSWREFPH PDEEDVEAAE SREHRRWIER NNSKLREKGK KDEGRRLREF 300 VDAAYKYDPR VARKKEDDRL ERERRKAEKE EARRRVLEEE EARKAAAEAA KRAVEEEAKR 360 QIEEARKVRE AAKAQSKQVR KRLRIIAEGA DGKRLASEDE VEKLTQRMEA EALAALVDTL 420 CGVGGAPGSA EQQAELRALL DEALRGIDTK EEEAARAREA ARKEAELAAK AAAREEHRRK 480 MAAMREWTEE ELRLLDKACN KFPMGTPKRW EAVAGFVRTR TLEEVLLMVK DRQGASATRM 540 KAQEDWKGAQ KNPAAVRAQA DTRAQAFTDV EVTLEGEAQA LIMPASTTPA PAAPAAAKPA 600 AAKPAAAKPG VAAAASTASS SSGGGAVANG AASTTSTASA APAAAAAAPA AAPEAAAPAA 660 AAAPAAPVAS DATSAAAGAK AGKKAAADSP WTEAQELALV AALKQCPKEL GAERWDAVAK 720 LVPGRSKAQC FKRFKELREA FRSKKGAGGA GGADGDDGDE *

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MGFQLSLRSS VRFIEYDEDN RPNGYGGREV VCHVAGPIPS PVMKDPAGYY FHLRALQQAG  60
LWEDPAEAAA EAAAAAAEAG AAASPSGAAA SADDKPPPGV EWKGSKARKR KQVKKKETDP  120
YALLGLSNER WTATEAQIRA AYRKVCLEAH PDKALVNVTD EAEKERIQDH FKLIQDAYDT  180
LSDKDKRREF DSIDEFDDTL PTQCDPKDFF KVFGPAFRRN SRWSEKEGVP DVGDEATSWE  240
DVCKFYDFWY TFKSWREFPH PDEEDVEAAE SREHRRWIER NNSKLREKGK KDEGRRLREF  300
VDAAYKYDPR VARKKEDDRL ERERRKAEKE EARRRVLEEE EARKAAAEAA KRAVEEEAKR  360
QIEEARKVRE AAKAQSKQVR KRLRIIAEGA DGKRLASEDE VEKLTQRMEA EALAALVDTL  420
CGVGGAPGSA EQQAELRALL DEALRGIDTK EEEAARAREA ARKEAELAAK AAAREEHRRK  480
MAAMREWTEE ELRLLDKACN KFPMGTPKRW EAVAGFVRTR TLEEVLLMVK DRQGASATRM  540
KAQEDWKGAQ KNPAAVRAQA DTRAQAFTDV EVTLEGEAQA LIMPASTTPA PAAPAAAKPA  600
AAKPAAAKPG VAAAASTASS SSGGGAVANG AASTTSTASA APAAAAAAPA AAPEAAAPAA  660
AAAPAAPVAS DATSAAAGAK AGKKAAADSP WTEAQELALV AALKQCPKEL GAERWDAVAK  720
LVPGRSKAQC FKRFKELREA FRSKKGAGGA GGADGDDGDE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5dje_A	1e-15	208	311	20	123	Zuotin
5dje_B	1e-15	208	311	20	123	Zuotin
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	323	334	RRKAEKEEARRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre01.g003376.t1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY289797	0.0	AY289797.1 Chlamydomonas reinhardtii GlsA-related protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001700377.1	0.0	predicted protein
TrEMBL	Q6JX09	0.0	Q6JX09_CHLRE; GlsA-related protein
STRING	EDO98219	0.0	(Chlamydomonas reinhardtii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1184	8	9
Representative plant	OGRP3823	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06110.2	7e-65	DnaJ domain ;Myb-like DNA-binding domain

Link Out ? help Back to Top
Phytozome	Cre01.g003376.t1.1

Publications ? help Back to Top
Cheng Q,Fowler R,Tam LW,Edwards L,Miller SM The role of GlsA in the evolution of asymmetric cell division in the green alga Volvox carteri. Dev. Genes Evol., 2003. 213(7): p. 328-35 [PMID:12743823]