PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cre01.g000050.t1.1

Organism

Chlamydomonas reinhardtii

Taxonomic ID

3055

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas

Family

Nin-like

Protein Properties

Length: 1605aa MW: 160942 Da PI: 8.2195

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cre01.g000050.t1.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	40.7	4.6e-13	1457	1504	3	50
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++++++dl+ +lp+ +AA++Lg+ T +CRq+GI+RWP +++ Cre01.g000050.t1.1 1457 NRLQVSDLRPVLHLPLVEAARQLGLHRTSFMTRCRQLGIARWPAKQLR 1504 57999**************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.437	1438	1527	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-13	1459	1504	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1605 aa Download sequence Send to blast
MSKVSRILHR KRDTARAERA RDVLAAKRAA SKRERRQLRR AKASRRKKKG GAEAAAGPAD 60 PPRNTDAESP SVRPSPALPV HAGEPSGRPA AREGSRNTAL GHCVDSAPAH PYRQPAPICG 120 KRKQRSTPLA RALRLVQAGA PGLQTGVDLV AGVRGAKEAQ QARRPAPPVA KVRLLSLPLE 180 PKVDGQVGGC SPGQDTQPAP SSQEGGPAVI VRPDVAVLGQ DRGLGVAEAA GTSAAAAAAA 240 VSQRDRGAGR QPGQEPAESR DTSLSSELQP QPQMQTQRHE QGQQGLHESP PCESEAAVCA 300 REAAVAAARL AAINAAAALP PDSPYVRAVM ETCSGQATGG QAGQNQLSAH GLLQPQHEQQ 360 QRRRRRGLGA VDSEYVACAK HAAAAAAHLA ALEAAAALPA DSPYLKAAVE VGRGAGFGWP 420 DERDSDVWAQ QRALLQQQTA RLQRALGAAL CGRGGAARYT PAGPVPEGHG AGACSSGAAA 480 SLEFRVGSSP GHAEAASGAR GAVLAAEAAT AEAEAAGGIL VPAVVAGGGP AGSGRGGGTD 540 EVRAHHGSAV TTITPGCSVC SRMQASRNGV QAADAPAGTG VGGAAEAPED AAAVPGAAGQ 600 GARVSEWVGS LLLQSPQAES APPVFQKSKP GAEASGPAAE GRDPSPQVPA AIGCGASSTT 660 HGSGTTSSGN GATTGSSNSG DDSGGSTSSG GSLTGAADSS HSGGSGGDRV RSLSGARRSL 720 HGITDSSRST SSGGSDQSTS KDVNDAVTSS GGGGLGAGGC GGGAGIVAGD EPSTAVPESL 780 HRPASERSPG RCELTAAAGG GAEAGSAEAG GRAVVPARES QSWAQQLLPE HLPQWEDEVP 840 SDGSSCSDTD SSEFEEGDWE DDDWPGGAAE AKDGSRDKSQ HSADKPGASD VTDHMMAAVL 900 SQAAPEHSAG VKRAGGEAAI LYADGSDSHG GPDAFVDNDS AAWEAALEAG AGPHESQAEA 960 PQQLAAAVTV STLALLGHGT GPVQQSRRRL PASGSGPAGH DTAGLGAGAV ALAEPQLQLP 1020 EQFDVNLLAP PVLVPAGTKL QALPPWSVGS PVTSPGLTQA GPGPSAAAGP RVAQVVSGSP 1080 YTDAYELPDD GGHPHLGGGA APQPSSREDG GGVAAGVGAH AGCNAQRGMT AAVIGPGGTR 1140 VGAASPPLVL SASGSGGGLA TPGRRRGRLV MLHGAGAAAC GTPTSQPRAG RAASNTATAG 1200 GAGPSAVAAA GPGMGDLGHQ GQPLPAEPPG AATRPVGRAG RAPPLSPLRR SSRVPGGQQQ 1260 QQQQQQQQQH AAGMAAQGQG PAEPSANGGA GRSRASAGGG MSPSRRAAVR LQRQPVVPSP 1320 RLVEDSRLHR SGQQQAVVGV GTAGGSRVGD RARGGSGAGL SAAATGVIKA ATASPSRGRT 1380 RSKPPERASI AGRGRGGRGR RATARSHRQS ESDQEETADA VRPSDPEEDK EKEGGGQQTR 1440 GAPARRRAPR TPSEVLNRLQ VSDLRPVLHL PLVEAARQLG LHRTSFMTRC RQLGIARWPA 1500 KQLRMLDLME EQLQELEACG VANHYTAKKC LEEAPGWLAQ VAAARSALLE NPCGFTMPQP 1560 LELLRQRHVK VAWAHRQKYK AALGEEGEEG EEGDDLDSQA QMSQ*

Sequence ? help Back to Top

Protein Sequence Length: 1605 aa Download sequence Send to blast

MSKVSRILHR KRDTARAERA RDVLAAKRAA SKRERRQLRR AKASRRKKKG GAEAAAGPAD  60
PPRNTDAESP SVRPSPALPV HAGEPSGRPA AREGSRNTAL GHCVDSAPAH PYRQPAPICG  120
KRKQRSTPLA RALRLVQAGA PGLQTGVDLV AGVRGAKEAQ QARRPAPPVA KVRLLSLPLE  180
PKVDGQVGGC SPGQDTQPAP SSQEGGPAVI VRPDVAVLGQ DRGLGVAEAA GTSAAAAAAA  240
VSQRDRGAGR QPGQEPAESR DTSLSSELQP QPQMQTQRHE QGQQGLHESP PCESEAAVCA  300
REAAVAAARL AAINAAAALP PDSPYVRAVM ETCSGQATGG QAGQNQLSAH GLLQPQHEQQ  360
QRRRRRGLGA VDSEYVACAK HAAAAAAHLA ALEAAAALPA DSPYLKAAVE VGRGAGFGWP  420
DERDSDVWAQ QRALLQQQTA RLQRALGAAL CGRGGAARYT PAGPVPEGHG AGACSSGAAA  480
SLEFRVGSSP GHAEAASGAR GAVLAAEAAT AEAEAAGGIL VPAVVAGGGP AGSGRGGGTD  540
EVRAHHGSAV TTITPGCSVC SRMQASRNGV QAADAPAGTG VGGAAEAPED AAAVPGAAGQ  600
GARVSEWVGS LLLQSPQAES APPVFQKSKP GAEASGPAAE GRDPSPQVPA AIGCGASSTT  660
HGSGTTSSGN GATTGSSNSG DDSGGSTSSG GSLTGAADSS HSGGSGGDRV RSLSGARRSL  720
HGITDSSRST SSGGSDQSTS KDVNDAVTSS GGGGLGAGGC GGGAGIVAGD EPSTAVPESL  780
HRPASERSPG RCELTAAAGG GAEAGSAEAG GRAVVPARES QSWAQQLLPE HLPQWEDEVP  840
SDGSSCSDTD SSEFEEGDWE DDDWPGGAAE AKDGSRDKSQ HSADKPGASD VTDHMMAAVL  900
SQAAPEHSAG VKRAGGEAAI LYADGSDSHG GPDAFVDNDS AAWEAALEAG AGPHESQAEA  960
PQQLAAAVTV STLALLGHGT GPVQQSRRRL PASGSGPAGH DTAGLGAGAV ALAEPQLQLP  1020
EQFDVNLLAP PVLVPAGTKL QALPPWSVGS PVTSPGLTQA GPGPSAAAGP RVAQVVSGSP  1080
YTDAYELPDD GGHPHLGGGA APQPSSREDG GGVAAGVGAH AGCNAQRGMT AAVIGPGGTR  1140
VGAASPPLVL SASGSGGGLA TPGRRRGRLV MLHGAGAAAC GTPTSQPRAG RAASNTATAG  1200
GAGPSAVAAA GPGMGDLGHQ GQPLPAEPPG AATRPVGRAG RAPPLSPLRR SSRVPGGQQQ  1260
QQQQQQQQQH AAGMAAQGQG PAEPSANGGA GRSRASAGGG MSPSRRAAVR LQRQPVVPSP  1320
RLVEDSRLHR SGQQQAVVGV GTAGGSRVGD RARGGSGAGL SAAATGVIKA ATASPSRGRT  1380
RSKPPERASI AGRGRGGRGR RATARSHRQS ESDQEETADA VRPSDPEEDK EKEGGGQQTR  1440
GAPARRRAPR TPSEVLNRLQ VSDLRPVLHL PLVEAARQLG LHRTSFMTRC RQLGIARWPA  1500
KQLRMLDLME EQLQELEACG VANHYTAKKC LEEAPGWLAQ VAAARSALLE NPCGFTMPQP  1560
LELLRQRHVK VAWAHRQKYK AALGEEGEEG EEGDDLDSQA QMSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cre01.g000050.t1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3E4M1	0.0	A0A2K3E4M1_CHLRE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Link Out ? help Back to Top
Phytozome	Cre01.g000050.t1.1