PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_996.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42141.7 Da PI: 6.5163 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 176 | 225 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g evm.model.supercontig_996.1 176 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 225 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-33 | 175 | 235 | No hit | No description |
PROSITE profile | PS51032 | 23.143 | 176 | 233 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-23 | 176 | 234 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 176 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-38 | 176 | 239 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-14 | 177 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 177 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 199 | 215 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MATAIDVYNS SSSNTGMIFS DPLREELMKA LEPFMKSSPS PTSLSSPSSP SSSSSFPSCS 60 FSQVFSNSQP NFYNPGIYSP SSSHMFYSGF SSYTYQNQMG MEQTGSVGLN HLTPSQILQI 120 QTQFLLQQQQ QQQLATMAAS KSSTEHNRSQ SLSFLSPKPV PMKHVAPSPP SKPTKLYRGV 180 RQRHWGKWVA EIRLPKNRTR LWLGTFDTAE EAALAYDKAA YKLRGDFARL NFPHLKHQGE 240 FGDYKPLHSS VDAKLQAICQ SLAANSQKQG NSGKQRSVLG DEKTSTVISP NQPSKMEQAL 300 ELDCPVKTEC GSPGSDDSKA ENSSRSSPDS SDESSGSSSP ESEMTFFEFS DSQWNETESF 360 GLEKYPSLEI DWEAIRKLSE Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-22 | 175 | 233 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-22 | 175 | 240 | 4 | 70 | ATERF1 |
3gcc_A | 8e-22 | 175 | 240 | 4 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_996.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897669.1 | 0.0 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A1I9RH38 | 0.0 | A0A1I9RH38_CARPA; AP2/ERF-related protein 2.4b | ||||
STRING | evm.model.supercontig_996.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2680 | 27 | 68 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 3e-54 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_996.1 |