PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_99.20
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 260aa    MW: 28905.7 Da    PI: 8.152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_99.20genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-1979128255
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t  eAa a++aa++kl+g
  evm.model.supercontig_99.20  79 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHEAALAYDAAARKLYG 128
                                  69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.99E-2278138No hitNo description
PROSITE profilePS5103222.36679136IPR001471AP2/ERF domain
PfamPF008473.3E-1479128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3079137IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2179137IPR016177DNA-binding domain
SMARTSM003802.4E-3779142IPR001471AP2/ERF domain
PRINTSPR003679.3E-108091IPR001471AP2/ERF domain
PRINTSPR003679.3E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MCLPIFSNNT PKKKKKKRTR NNHSFPAAAD RVLCLCWHLY TCIYIFIYVH INMSKSVMES  60
SSRKGCMRGK GGPENALCTY KGVRQRTWGK WVAEIREPNR GARLWLGTFD TSHEAALAYD  120
AAARKLYGPE AKLNLPQQPS NSSNNTHLII PQMGNQFPNH RTSAPSCSSN NDSTVPCPDS  180
KVESRGNLVD SNVKFGKDED GMEEIWENMS LNLPVFDDSI WAEAAMSLGF PTMEDPGILG  240
GNFVDTTGWD SLHSPPWCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1880136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117KKKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_99.20
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892801.10.0dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-56DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1U8JFD63e-81A0A1U8JFD6_GOSHI; dehydration-responsive element-binding protein 2D-like
STRINGevm.model.supercontig_99.200.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.17e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]