PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_98.6
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 761aa    MW: 84323.3 Da    PI: 6.2865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_98.6genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21106161156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  evm.model.supercontig_98.6 106 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                                 7999************************************************9877 PP
2START214.83e-672745002206
                                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS
                       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeq 71 
                                 + +ea++el k+a+a++p+Wv+s     e++n+d+++++f+ +++          s+ea+r++g+v+ +l +l + +ld + q
  evm.model.supercontig_98.6 274 IVNEAMEELKKMASAGHPLWVRSLetgrEILNYDVYMKEFSVENSpvnikrpvmTSIEASRDTGLVFVDLSKLIQCFLDGN-Q 355
                                 6689************************************988889***********************************.* PP

                                 T-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS
                       START  72 Wdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143
                                 W+e+++    ka+++++i+ g      ga+qlm+aelq+l+p+vp R+++fvRy+++l+ ++w+ivdvS+d  +++  ++s+v
  evm.model.supercontig_98.6 356 WKEMFPclvsKAAIVDTICHGegpnrnGAVQLMFAELQMLTPMVPtREVYFVRYCKELSSEQWAIVDVSIDKVEENI-DASLV 437
                                 ***************************************************************************98.9**** PP

                                 E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 +++++pSg++ie+ksngh+kvtwveh +++++ +h ++r +v++gla+ga++w+atlq  ce+
  evm.model.supercontig_98.6 438 KCRKRPSGCIIEDKSNGHCKVTWVEHLECQKSNVHTMYRTIVNNGLAFGARHWLATLQLECER 500
                                 *************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-2391157IPR009057Homeodomain-like
SuperFamilySSF466891.13E-2094164IPR009057Homeodomain-like
PROSITE profilePS5007118.22103163IPR001356Homeobox domain
SMARTSM003898.3E-19105167IPR001356Homeobox domain
PfamPF000461.0E-18106161IPR001356Homeobox domain
CDDcd000864.12E-17110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084838.399264503IPR002913START domain
SuperFamilySSF559613.3E-33267500No hitNo description
CDDcd088752.45E-107268499No hitNo description
SMARTSM002342.3E-67273500IPR002913START domain
PfamPF018522.1E-53274500IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-6330487IPR023393START-like domain
SuperFamilySSF559611.51E-10530743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MGVDMSNPPN SHTKDFFASP ALSLSLAGIF RDGGAGAAAA AAGSMEVEEG DEGSGGGGRR  60
DEYQRAEISS ENSGPTRSRS EDDFDREDHN EGDEDHGDDK NKKKKRKKYH RHTAEQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS VLKSELDKLR  180
EENKIMRETI NKACCPNCGS GTTTRDACIT PEEQELRIEN AKLKAEVERL RAGIGKQQAA  240
GAASCSAGNE QENRSSLDFY TGIFGVDKSR ITEIVNEAME ELKKMASAGH PLWVRSLETG  300
REILNYDVYM KEFSVENSPV NIKRPVMTSI EASRDTGLVF VDLSKLIQCF LDGNQWKEMF  360
PCLVSKAAIV DTICHGEGPN RNGAVQLMFA ELQMLTPMVP TREVYFVRYC KELSSEQWAI  420
VDVSIDKVEE NIDASLVKCR KRPSGCIIED KSNGHCKVTW VEHLECQKSN VHTMYRTIVN  480
NGLAFGARHW LATLQLECER LVFFMATNVP TKDSIGVATL AGRKSILKLA QRMTWSFCHA  540
LGASSYHTWN KVSSKTGEDV RVSSRKNLND PGEPVGVIVC AVSSVWLPVC PHLLFDFLRD  600
EARHSEWDMM SNGGPVQSIA NLAKGQDRGN AVTIQNIKSK ENSLWVLQDS SINAYESMVV  660
YAPVDITGMQ SVITGCDSSS IAILPSGFSI LPDGLESRPL VITSRPEKSN EGGSLLTIAF  720
QILTNTSPNA KLTMESVESV NTLISCTLRN IRTSLQIEDG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_98.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892835.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1R3G7N40.0A0A1R3G7N4_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_98.60.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Representative plantOGRP9080913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]