PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_96.59
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Dof
Protein Properties Length: 235aa    MW: 25263 Da    PI: 9.6107
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_96.59genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof49.21.1e-1535623461
                       zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkks 61
                                 ++CrryWt+GG+lrnvPvGgg+rknk+s
  evm.model.supercontig_96.59 35 RTCRRYWTEGGSLRNVPVGGGSRKNKRS 62
                                 79***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.1E-113561IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-83561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEAAKWSQGF QEIGIVNPME QMVSNTCNRG MVERRTCRRY WTEGGSLRNV PVGGGSRKNK  60
RSIASSGSSS SSSSATTTTS ALSALTRLPD LNPPSLSQFS THQNPKTQKG QDLNLSFPEG  120
HHALELLGSA GRNINTSTMN AFIPQSMPDS NSLFPAGFPL QDYKPTISFS IDGLGNRPSN  180
IQGVQENHGG NRFFFPFGEM KQLPNGTADQ VEQQNKGQGP SVGYWNGMMG GGSW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_96.59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893095.11e-150dof zinc finger protein DOF3.7-like isoform X5
TrEMBLA0A061E0A41e-70A0A061E0A4_THECC; F-box family protein, putative isoform 1
STRINGevm.model.supercontig_96.591e-172(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.31e-35Dof family protein