PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_96.57
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 265aa    MW: 30322.5 Da    PI: 10.1371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_96.57genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-171461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 rg+WT+ Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
  evm.model.supercontig_96.57 14 RGPWTPREDTLLIKYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                                 89******************************99************97 PP

2Myb_DNA-binding521.6e-1667112148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  rg+ T +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.supercontig_96.57  67 RGNITSDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                                  7999******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.73961IPR017930Myb domain
SuperFamilySSF466893.45E-3011108IPR009057Homeodomain-like
SMARTSM007172.9E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-241568IPR009057Homeodomain-like
CDDcd001671.28E-101661No hitNo description
PROSITE profilePS5129425.96562116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.0E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2669116IPR009057Homeodomain-like
CDDcd001671.77E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRTPCCSKV GLHRGPWTPR EDTLLIKYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TSDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLRCQG  120
TDPNTHKKLP ENNKLQSINK EKSKVKATRS KVHLPKPIRL PPSFSNSSLP TTKHSASRHG  180
RESSGLVTDF AVDAIPSYNL NRPSNGYHVQ CHDHLYRFHG LNVDSSDFEC QSDQLLTADH  240
ISLEKLYKEY LQLLKTDNDQ FKID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_96.57
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893054.10.0transcription repressor MYB6-like
TrEMBLA0A061DUF41e-111A0A061DUF4_THECC; Myb domain protein 7, putative
STRINGevm.model.supercontig_96.570.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-72myb domain protein 5