PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_96.47
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 173aa    MW: 19550.4 Da    PI: 6.6524
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_96.47genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.8e-39141131100
                       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                                  +C+aC++lrr+C ++C lapyfp+++++kfa vh++FGasnv+k+++ ++e++reda++++v+eA+ar+rdPvyG++g i++
  evm.model.supercontig_96.47  14 PCSACRMLRRRCDTNCLLAPYFPSDDMEKFAGVHRVFGASNVIKMIQMVEETKREDAVKAIVFEARARMRDPVYGSTGAIFH 95 
                                  7********************************************************************************* PP

                       DUF260  83 lqqqleqlkaelallkee 100
                                  lq+ +++l+++l++++++
  evm.model.supercontig_96.47  96 LQKMVQELETQLQSTRAQ 113
                                  ************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.00113114IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-3914111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MNEQGVARSR THQPCSACRM LRRRCDTNCL LAPYFPSDDM EKFAGVHRVF GASNVIKMIQ  60
MVEETKREDA VKAIVFEARA RMRDPVYGST GAIFHLQKMV QELETQLQST RAQALILQAQ  120
TDELLRLNLV TNQHLPHDPC LDFANFYLLN DDVSMAASYP TCNSPTPCDW IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-331411511112LOB family transfactor Ramosa2.1
5ly0_B6e-331411511112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_96.47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893077.11e-128LOB domain-containing protein 11-like
SwissprotQ9SK082e-41LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A061DSL06e-72A0A061DSL0_THECC; LOB domain-containing protein 11
STRINGevm.model.supercontig_96.471e-128(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1863068
Representative plantOGRP1325945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.18e-44LOB domain-containing protein 11