PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_96.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARF | ||||||||
Protein Properties | Length: 689aa MW: 76054.7 Da PI: 6.8299 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.3e-23 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L evm.model.supercontig_96.40 131 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLV 210 99****************************9543..445569**************************************** PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD +vF + +++el+v+v+r evm.model.supercontig_96.40 211 AGDAFVFL--RGDNGELRVGVRR 231 ********..3489999****98 PP | |||||||
2 | Auxin_resp | 103.7 | 2.3e-34 | 257 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++k+ +svGmRfkm+fe+eds+err++Gt+vgv+d+++ +W++SkWrsL evm.model.supercontig_96.40 257 ASHAVTTNTLFIVYYKPRT--SQFIIGINKYLESVKHGFSVGMRFKMRFEGEDSPERRFTGTIVGVEDISS-QWSGSKWRSL 335 689***************6..9**********************************************777.*********9 PP Auxin_resp 83 k 83 k evm.model.supercontig_96.40 336 K 336 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-40 | 120 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-40 | 124 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.99E-20 | 129 | 231 | No hit | No description |
Pfam | PF02362 | 4.4E-21 | 131 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-21 | 131 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.928 | 131 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-32 | 257 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.3E-11 | 548 | 656 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.78E-13 | 570 | 649 | No hit | No description |
PROSITE profile | PS51745 | 25.21 | 573 | 665 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MAHVDGNLRG SASSRGVSGR ESDGDLYREL WKACAGPLVE VPRSGERVFY FPQGHMEQLE 60 ASTNQELNQQ IPRFNLPSKI LCTVVHIQLL AEQETDEVYA QITLQPEADP SEPPGPDPCL 120 PEPPKRTVHS FCKILTASDT STHGGFSVLR KHATECLPPL DMTQATPTQE LAAKDLHGYE 180 WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDAFVFLRG DNGELRVGVR RLARQQSPMP 240 SSVISSQSMH LGVLATASHA VTTNTLFIVY YKPRTSQFII GINKYLESVK HGFSVGMRFK 300 MRFEGEDSPE RRFTGTIVGV EDISSQWSGS KWRSLKIQWD EPATIQRPER VSPWEIEPFL 360 APSSVNLAQP AIKCKRPRPV DVSVSEITTN SAASSLWYNG PSQSHELNQL SSPADVQSCD 420 SQVVWSTRQK EIDGSLVNSS GGCNSRVRQE GIWSSTPVNV SLSLFADSAE DNKTVLSSRP 480 KSGVMHDQVE KGKKSEISAG CRLFGINLTE KSSASATHPA VDSSTAQGPV PVTDVADKDR 540 DLEASSSAKE QKQDTLEVSV KESQSKQGSS TMRSRTKVQM QGIAVGRAVD LTALKGYDEL 600 INELERMFEI KGEIGPGNKW AVVFTDDEGD MMLVGDDPWL EFCKMVKKMV IYSSEEVKKI 660 RRKFKFPMSS VESEGTVGSL DSEHKSET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-179 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_A | 1e-179 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldw_B | 1e-179 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldx_A | 1e-179 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
4ldx_B | 1e-179 | 8 | 359 | 1 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 378 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_96.40 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893040.1 | 0.0 | auxin response factor 18 isoform X1 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A067K091 | 0.0 | A0A067K091_JATCU; Auxin response factor | ||||
STRING | evm.model.supercontig_96.40 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_96.40 |
Publications ? help Back to Top | |||
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