PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_95.76

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

CO-like

Protein Properties

Length: 376aa MW: 41186.2 Da PI: 5.9308

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_95.76	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	5.9e-08	20	60	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+++++ + lfC+ ++ +lC C + +H + H+ evm.model.supercontig_95.76 20 KPCDTCKSAAAALFCRVDSAFLCLACDSRIH-SlnklasrHE 60 68*****************************.4355555565 PP
2	zf-B_box	25	3.9e-08	62	107	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC C +H+ H++vp+ evm.model.supercontig_95.76 62 VWMCEVCEQAPAAVTCKADAAALCVICDADIHSAnplarrHERVPV 107 689*****************************66899999999986 PP
3	CCT	69.9	6.6e-24	302	345	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ evm.model.supercontig_95.76 302 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 345 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.139	17	64	IPR000315	B-box-type zinc finger
SMART	SM00336	1.5E-10	17	64	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.5E-6	20	61	IPR000315	B-box-type zinc finger
CDD	cd00021	1.60E-8	21	64	No hit	No description
PROSITE profile	PS50119	10.751	60	107	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.7E-6	62	107	IPR000315	B-box-type zinc finger
CDD	cd00021	2.35E-9	63	107	No hit	No description
SMART	SM00336	3.3E-10	65	107	IPR000315	B-box-type zinc finger
Pfam	PF06203	5.9E-18	302	344	IPR010402	CCT domain
PROSITE profile	PS51017	16.817	302	344	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MGIEFQGVKG IAVGWAVTAK PCDTCKSAAA ALFCRVDSAF LCLACDSRIH SLNKLASRHE 60 RVWMCEVCEQ APAAVTCKAD AAALCVICDA DIHSANPLAR RHERVPVEPF FDAAESVIKS 120 TPSTFLMRTD NVTGDYAGAC QHEDVEVGSW LLPNYNLGNS KFNMETDSCV DMKSGDLVFP 180 DMDPFLDFDY HNSFPQHRSS AATDGVAPVQ TKPTPVPVIN NENFFDIEFC RSKLSSFNNQ 240 NQSLSQSVSS SSLDFGVVPD GNSVSDISYN FGRNMSDPSV PVSCINAATT ASQATQLCGI 300 DREARVLRYR EKRKNRKFEK TIRYASRKAY AESRPRIKGR FAKRTEAETD LESNYDSASS 360 TAFMADTPYG VVPSF*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MGIEFQGVKG IAVGWAVTAK PCDTCKSAAA ALFCRVDSAF LCLACDSRIH SLNKLASRHE  60
RVWMCEVCEQ APAAVTCKAD AAALCVICDA DIHSANPLAR RHERVPVEPF FDAAESVIKS  120
TPSTFLMRTD NVTGDYAGAC QHEDVEVGSW LLPNYNLGNS KFNMETDSCV DMKSGDLVFP  180
DMDPFLDFDY HNSFPQHRSS AATDGVAPVQ TKPTPVPVIN NENFFDIEFC RSKLSSFNNQ  240
NQSLSQSVSS SSLDFGVVPD GNSVSDISYN FGRNMSDPSV PVSCINAATT ASQATQLCGI  300
DREARVLRYR EKRKNRKFEK TIRYASRKAY AESRPRIKGR FAKRTEAETD LESNYDSASS  360
TAFMADTPYG VVPSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_95.76

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893194.1	0.0	zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	1e-129	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A061GXB2	1e-172	A0A061GXB2_THECC; Zinc finger protein CONSTANS-LIKE 5, putative
STRING	evm.model.supercontig_95.76	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7899	24	35
Representative plant	OGRP691	17	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-125	CONSTANS-like 5

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_95.76

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]