PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_941.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GATA | ||||||||
Protein Properties | Length: 228aa MW: 25176 Da PI: 7.8278 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.4 | 3.9e-18 | 149 | 183 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l evm.model.supercontig_941.1 149 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 183 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.5E-73 | 2 | 227 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.2E-16 | 143 | 193 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.6E-14 | 147 | 181 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.385 | 147 | 179 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.47E-14 | 147 | 206 | No hit | No description |
CDD | cd00202 | 8.13E-14 | 148 | 195 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 149 | 174 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.7E-16 | 149 | 183 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDMYGLSSPD LFRIDDLLDF SNDDLFSVSS TAGANSSLET ITTTTSNSLP PQNPTAPFIT 60 FPSLSTDSAY DLCVPTDDVA ELEWLSRFVD DSFSDFPSNS VVGSDTSLFP GRARSKRSRA 120 TSWTLSPEAK GNKERSHRQS SPEGGVRRCT HCASEKTPQW RTGPLGPKTL CNACGVRYKS 180 GRLVPEYRPA ASPTFVLTQH SNSHRKVLEL RRQKEVLRQQ EQKHQVC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_941.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898436.1 | 1e-168 | GATA transcription factor 2-like | ||||
Swissprot | O49741 | 2e-80 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A067K962 | 3e-92 | A0A067K962_JATCU; GATA transcription factor | ||||
STRING | evm.model.supercontig_941.1 | 1e-167 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3203 | 26 | 66 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-76 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_941.1 |
Publications ? help Back to Top | |||
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