PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_94.54
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 404aa    MW: 46281.9 Da    PI: 6.9625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_94.54genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.17.6e-45561822127
                          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratks 80 
                                  ppG+rF+P deelv +yL++kv++ +l+  ++i +v++yk+ P dL +   ++ + +kewyfFs+rd+ky++g+r+nra+ +
  evm.model.supercontig_94.54  56 PPGYRFKPDDEELVLDYLRPKVKNMRLPP-NMIMDVEVYKFTPDDLSAtfpTIGKYQKEWYFFSPRDRKYRNGDRPNRAAGN 136
                                  9*************************999.89**************854666777889************************ PP

                          NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                                  gyWkatg dk++++ ++++++ ++ Lvfy+g+a++g+ktdW+mhey 
  evm.model.supercontig_94.54 137 GYWKATGADKDIYR-NKNETWSRRALVFYRGKAQRGSKTDWIMHEYY 182
                                  **************.9999***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-5150218IPR003441NAC domain
PROSITE profilePS5100549.48455218IPR003441NAC domain
PfamPF023658.4E-2356181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEDQQQLNLS KTFVNSPVDV VGDGSDSSAA ANKGFLNHAD QTYNYGELEA YFASFPPGYR  60
FKPDDEELVL DYLRPKVKNM RLPPNMIMDV EVYKFTPDDL SATFPTIGKY QKEWYFFSPR  120
DRKYRNGDRP NRAAGNGYWK ATGADKDIYR NKNETWSRRA LVFYRGKAQR GSKTDWIMHE  180
YYFKENKDKN EITNPSNKKK GGNCMRLDGW VLCKIYKKTG RYGNKVSNGQ QDVAIDSINP  240
YQNGVQELNN DIAQIPIENG VADSIVMASK VYNMSPAAST LHQYAPIEMY NQCMSSHKKI  300
IFPPQVPFGE YPNLLDHPHN TNFLYMMPDP MAAHTSPMKG RFKNEESVNF PGFFDSTSVL  360
DMAVHYDLSW LEHFNHFDNN DHHPFMTSLD NIVSVPASFS ETK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-455421814168Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_94.54
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893254.10.0NAC domain-containing protein 30-like
STRINGevm.model.supercontig_94.540.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-51NAC domain containing protein 47