PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_92.99 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 27231.2 Da PI: 6.0537 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde+l v++lG ++W++Iar g++R++k+c++rw++yl evm.model.supercontig_92.99 14 RGPWLEEEDERLTTFVNLLGERRWDSIARASGLKRSGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57 | 4.3e-18 | 70 | 112 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++eE+++++++++q+G++ W++Iar+++ gRt++++k++w+++l evm.model.supercontig_92.99 70 ISEEEEQIIIQLHQQWGNK-WAKIARRLP-GRTDNEIKNYWRTHL 112 599****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.578 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-28 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.01E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.56 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-16 | 70 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.34E-7 | 81 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVCRASMKEE KPRRGPWLEE EDERLTTFVN LLGERRWDSI ARASGLKRSG KSCRLRWLNY 60 LRPNLKHGDI SEEEEQIIIQ LHQQWGNKWA KIARRLPGRT DNEIKNYWRT HLRKKLQVEE 120 QVHFQAGRNN GKQEFLYERD DGSISICQSQ DLRPAEDTWE SQNINYPNDG IGNYSFSSSP 180 CETWISDWIS ELSSDQSLVK YHQDYSIYSP GWISEESNIW DYSGPLWNMN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-27 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_92.99 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893343.1 | 1e-170 | transcription factor MYB27 | ||||
Swissprot | Q9SCP1 | 2e-66 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A061ESZ7 | 6e-90 | A0A061ESZ7_THECC; Myb domain protein 27, putative | ||||
STRING | evm.model.supercontig_92.99 | 1e-170 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11397 | 25 | 33 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 6e-60 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_92.99 |
Publications ? help Back to Top | |||
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