PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 398aa    MW: 45655 Da    PI: 9.0059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20140190155
                          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  ++y+GVr++  +g+WvAeIr+p++   r r +lg+f taeeAa a+++a+++l+g
  evm.model.supercontig_92.16 140 CQYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATAEEAAMAYDEAARRLYG 190
                                  68*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-13140190IPR001471AP2/ERF domain
CDDcd000183.24E-31140200No hitNo description
SMARTSM003809.0E-38141204IPR001471AP2/ERF domain
PROSITE profilePS5103222.84141198IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21141199IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-30141199IPR001471AP2/ERF domain
PRINTSPR003675.1E-10142153IPR001471AP2/ERF domain
PRINTSPR003675.1E-10164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVVGEDKANS VLGVSLRERE RMRMAWEKGE KKLKNQAVAC EKRELVKMEN VLRGDDMQAY  60
HMSKAMFGTH RINKCVNVYI TRISRRDDMQ AYHMSNAMFG THLLLLPQKT LPMENYRRSP  120
FKQWKKGPTR GKGGPENALC QYRGVRQRTW GKWVAEIREP KKRSRLWLGS FATAEEAAMA  180
YDEAARRLYG PDAYLNLPHL QPNINNNCPV KSQKFKWIPS KNFISMFPPC GLLNINAQPS  240
VQVIHQRLQE LQKSGVLSHT SSSSSSSCES KTTIQTLSDK TYDKHPASKD NDMEISSDKM  300
LKDQEKPQID LNEFLQQLGI LKEEKQEEVN NTRENFKDEE SSMKDHCELM AFADKSFNWD  360
ALIEMHGLPA TQGVESSSFR VCNSQEEPTF TTSVWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-18141198260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.16
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893312.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX52e-91DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A061F4761e-142A0A061F476_THECC; Integrase-type DNA-binding superfamily protein
STRINGevm.model.supercontig_92.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.13e-78ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]