PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_90.68
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 348aa    MW: 39575.3 Da    PI: 5.5913
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_90.68genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.71.9e-161461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT eEde+l  ++++ G g+W++ ++  g++R++k+c++rw +yl
  evm.model.supercontig_90.68 14 KGPWTVEEDEKLTAYINKNGLGSWRSLPKLAGLNRCGKSCRLRWTNYL 61
                                 79********************************************97 PP
2Myb_DNA-binding56.75.5e-1867111147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  rg++++eE++l++++++ lG++ W++Ia++++ gRt++++k++w+++
  evm.model.supercontig_90.68  67 RGKFSQEEEKLIINLHAVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 111
                                  89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.84961IPR017930Myb domain
SuperFamilySSF466895.99E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
CDDcd001676.09E-101661No hitNo description
PROSITE profilePS5129427.18362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2765116IPR009057Homeodomain-like
SMARTSM007175.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.96E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRSPCCNDE NLKKGPWTVE EDEKLTAYIN KNGLGSWRSL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEKLIIN LHAVLGNKWS RIASHLPGRT DNEIKNFWNT HIRKKLLKMG  120
VDPTTHKPRI DLNHLLLGLS HLIFNADDQF SSMINLETAL KLQADAAQLA KTQLLQNLLK  180
SILSPTKLPP YFPNLSHNYI NNMTEPNWKL HNDPNCSSSN APTPLLQENY DEGEAMMNEL  240
WACFDQKDGA HQYLCNENGE ENENPVSKLV SGADDQDYNN KNNNDNNNTD QMVSSSTQMP  300
QLLSASSSPT YDMFQTTCDN LIMDDDDATY WNNILDDHDQ YCNKLIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28111164108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_90.68
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893590.10.0transcription factor MYB41-like
SwissprotQ9S9Z23e-78MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A061G6W52e-98A0A061G6W5_THECC; Myb domain protein 39, putative
STRINGevm.model.supercontig_90.680.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-75myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]