PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_90.5

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HD-ZIP

Protein Properties

Length: 788aa MW: 87478.4 Da PI: 5.3467

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_90.5	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.6e-20	80	135	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k evm.model.supercontig_90.5 80 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 135 688899***********************************************998 PP
2	START	160.5	1.3e-50	277	501	2	206
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeq 71 la + +el+++ + +ep+W eng+e l +e ++ +++ea+r+s+vv+m++ +lv +ld++ + evm.model.supercontig_90.5 277 LAVSSVDELLRMCQTNEPLWIGNG--ENGKELLNLEEHARMfpwplnlkqhsseFRTEASRDSAVVIMNSITLVDAFLDTN-R 356 6778899************999..99999999998888899**********************************.9 PP T-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSE CS START 72 Wdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvv 143 W e ++ +a+t++v+ssg g l+lm+aelq+ splvp R+ +f+Ry+rq ++g+w+ivd +ds ++ ++s+ evm.model.supercontig_90.5 357 WMELFPsivaRAKTVQVLSSGvsgasGSLHLMYAELQVVSPLVPtREAYFLRYCRQnVEEGSWAIVDFPIDSLHENM-QHSFP 438 9999999999*******************************************9**************9.67777 PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++pSg+li++++ng+s+vtwveh++ +++ +h+++ +lv sg+a+ga +w+a lqrqce+ evm.model.supercontig_90.5 439 LYRRRPSGCLIQDMPNGYSRVTWVEHAEIEEKPVHQIFSQLVYSGMAFGAHRWLAILQRQCER 501 667********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.7E-22	59	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.61E-19	69	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	77	137	IPR001356	Homeobox domain
SMART	SM00389	7.4E-19	78	141	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-17	80	135	IPR001356	Homeobox domain
CDD	cd00086	1.52E-17	80	138	No hit	No description
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.794	267	504	IPR002913	START domain
SuperFamily	SSF55961	4.26E-32	268	503	No hit	No description
CDD	cd08875	6.84E-112	271	500	No hit	No description
SMART	SM00234	4.0E-33	276	501	IPR002913	START domain
Pfam	PF01852	3.8E-43	277	501	IPR002913	START domain
SuperFamily	SSF55961	1.46E-14	544	757	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MGAGNVVSAE NLFSSSPIQN TNFNFMPFNP FPSIVPKEEN GMLMNMRGKE EIMESGSGSE 60 QVEEKSGNEQ ESTDQQPPKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL KLSQDLGLKP 120 RQVKFWFQNR RTQMKAQQDR ADNLILRAEN DSLKNENYRL QAELRNLVCP NCGGPAMLGG 180 FEELRLENAR LREELERVCC IASRYSGRPI QPMEPAPPMM PPSLELDMNI YPRHFSEAPN 240 MEPCPGMMSV PMLPETSPFP EGGFVLMEEE KALAIELAVS SVDELLRMCQ TNEPLWIGNG 300 ENGKELLNLE EHARMFPWPL NLKQHSSEFR TEASRDSAVV IMNSITLVDA FLDTNRWMEL 360 FPSIVARAKT VQVLSSGVSG ASGSLHLMYA ELQVVSPLVP TREAYFLRYC RQNVEEGSWA 420 IVDFPIDSLH ENMQHSFPLY RRRPSGCLIQ DMPNGYSRVT WVEHAEIEEK PVHQIFSQLV 480 YSGMAFGAHR WLAILQRQCE RVASLMARNI TDLGVIPSPE ARKNLMRLAQ RMIRTFSVNM 540 SCCSGQSWTA LSESVDDTVR ITTRKITEPG QPNGVILCAV STTWLPYPHY HVFDLLRDEQ 600 RRSQLEVLSN GSALHEVAHI ANGSHQGNCI SLLRINVASN SSQHVELMLQ ESCTDQSGSL 660 VVFSNVDVDS IQLAMSGEDP SCIPLLPLGF SIIPVETINS PATVGDSSSS PDQQQNSAGC 720 LLTVGLQALA STVPTSKLNL SSVTAINNHL CNTLHQITSA LISCCPNNTA AAAGSVSESA 780 PASAPDN*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MGAGNVVSAE NLFSSSPIQN TNFNFMPFNP FPSIVPKEEN GMLMNMRGKE EIMESGSGSE  60
QVEEKSGNEQ ESTDQQPPKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL KLSQDLGLKP  120
RQVKFWFQNR RTQMKAQQDR ADNLILRAEN DSLKNENYRL QAELRNLVCP NCGGPAMLGG  180
FEELRLENAR LREELERVCC IASRYSGRPI QPMEPAPPMM PPSLELDMNI YPRHFSEAPN  240
MEPCPGMMSV PMLPETSPFP EGGFVLMEEE KALAIELAVS SVDELLRMCQ TNEPLWIGNG  300
ENGKELLNLE EHARMFPWPL NLKQHSSEFR TEASRDSAVV IMNSITLVDA FLDTNRWMEL  360
FPSIVARAKT VQVLSSGVSG ASGSLHLMYA ELQVVSPLVP TREAYFLRYC RQNVEEGSWA  420
IVDFPIDSLH ENMQHSFPLY RRRPSGCLIQ DMPNGYSRVT WVEHAEIEEK PVHQIFSQLV  480
YSGMAFGAHR WLAILQRQCE RVASLMARNI TDLGVIPSPE ARKNLMRLAQ RMIRTFSVNM  540
SCCSGQSWTA LSESVDDTVR ITTRKITEPG QPNGVILCAV STTWLPYPHY HVFDLLRDEQ  600
RRSQLEVLSN GSALHEVAHI ANGSHQGNCI SLLRINVASN SSQHVELMLQ ESCTDQSGSL  660
VVFSNVDVDS IQLAMSGEDP SCIPLLPLGF SIIPVETINS PATVGDSSSS PDQQQNSAGC  720
LLTVGLQALA STVPTSKLNL SSVTAINNHL CNTLHQITSA LISCCPNNTA AAAGSVSESA  780
PASAPDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_90.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893615.1	0.0	homeobox-leucine zipper protein HDG5
Refseq	XP_021893617.1	0.0	homeobox-leucine zipper protein HDG5
Refseq	XP_021893618.1	0.0	homeobox-leucine zipper protein HDG5
Refseq	XP_021893619.1	0.0	homeobox-leucine zipper protein HDG5
Refseq	XP_021893620.1	0.0	homeobox-leucine zipper protein HDG5
Refseq	XP_021893621.1	0.0	homeobox-leucine zipper protein HDG5
Swissprot	Q9FJS2	0.0	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	A0A061G5U7	0.0	A0A061G5U7_THECC; Homeobox-leucine zipper protein HDG5 isoform 1
STRING	evm.model.supercontig_90.5	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4356	25	48
Representative plant	OGRP9475	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_90.5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]