PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.363
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 145aa    MW: 15994.5 Da    PI: 9.9257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.363genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.0001841721854
                                 HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                 +++  L++l+ +      +K + a++L +A+eYI+ L
  evm.model.supercontig_9.363 41 ERIVALQKLVSPY-----GKTDTASVLLEAMEYIQFL 72
                                 5667777777777.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.0E-92285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.3912372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-112985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MMENKRSPCS VNQSSLTSLA SKRHKADLSF SNKEKKEKVG ERIVALQKLV SPYGKTDTAS  60
VLLEAMEYIQ FLHEQVKVLS APYLQSLSAA KMQELEQYSL RSRGLCLVPI SCTVGVARSN  120
GADIWAPIKT STSPRFEKPV SQFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.363
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907053.11e-103transcription factor bHLH153
SwissprotQ7XJU23e-69BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A067FKP21e-84A0A067FKP2_CITSI; Uncharacterized protein
TrEMBLA0A2H5NX861e-84A0A2H5NX86_CITUN; Uncharacterized protein
TrEMBLV4VSH71e-84V4VSH7_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_9.3631e-102(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-71bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]