PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.36
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 394aa    MW: 43252.5 Da    PI: 6.6293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.36genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43.1e-33210268159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK vk+s++prsYYrCts gC vkk+vers+edp++v++tYeg+H+h+
  evm.model.supercontig_9.36 210 LDDGYRWRKYGQKAVKNSPYPRSYYRCTSGGCGVKKRVERSSEDPTIVVTTYEGQHTHP 268
                                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-35195270IPR003657WRKY domain
SuperFamilySSF1182901.44E-29202270IPR003657WRKY domain
PROSITE profilePS5081133.224205270IPR003657WRKY domain
SMARTSM007741.7E-39210269IPR003657WRKY domain
PfamPF031064.2E-27211268IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEKKKIEEEL GETSNWNMAN SMFSDEATLA FSSIFDNMTP CDHGGSGYSG SGSGSGSGYS  60
FGFTDLLGIN HDFPASSSPL FDYYSSLHHP PTNAFPFPTT QQFQGQGQDQ EQEKKKQGLA  120
PSPVSTTVAA ESSEVLNNPP TPNSSSISSY SNEAGNDDDH HHHHQQSTKD QEDEQDQDKS  180
KKQLKPKKKN QKKQREPRFA FMTKSEVDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTSGG  240
CGVKKRVERS SEDPTIVVTT YEGQHTHPCP ITPRGSIGSI LPQNPTAENL IGATASSFLE  300
PPYLNRQQHQ RPYIYSPSPS SNVINISTSN STGPVGTTTF IDPTSFSSFA NVPPAPSPSP  360
TPTLSLLRDH GLLQDIVPSQ MIRSINEPKT ELK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29200270777Probable WRKY transcription factor 4
2lex_A3e-29200270777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.36
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906738.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ42e-59WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A061EQ426e-95A0A061EQ42_THECC; WRKY DNA-binding protein 48, putative isoform 1
STRINGevm.model.supercontig_9.360.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-53WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]