PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_9.328

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Nin-like

Protein Properties

Length: 975aa MW: 106489 Da PI: 4.9976

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_9.328	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	580	631	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ evm.model.supercontig_9.328 580 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 631 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.995	565	651	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	583	631	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	4.1E-24	871	953	No hit	No description
SuperFamily	SSF54277	2.8E-22	871	960	No hit	No description
SMART	SM00666	1.1E-21	874	956	IPR000270	PB1 domain
PROSITE profile	PS51745	22.318	874	956	IPR000270	PB1 domain
Pfam	PF00564	1.1E-17	875	955	IPR000270	PB1 domain
CDD	cd06407	4.80E-31	875	955	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence Send to blast
MEGWVLTDGS IKNSISEDPL INISELMNFD TYAGWCNSPS APDQMSTSHG LSTMPSVPYS 60 SFDSLNFSAQ NSAALPDRAG TFNGMEFSYS CEDRLVVLPG DSQVGCSLNS TDADDSGAKQ 120 GNGSYGQSLA SDKAMCMISR SVGRTLDERM LRALSLFKDS SGGGILAQVW VPVKLGDQFM 180 LSTSDQPYLL DQMLTGYREV SRKFTFSAEM KEGSFLGLPG RVFSSRVPEW TSNVSYYNKA 240 EYLRGKYAAD HEVRGSLALP VFDVPDMYCC AVLELVTVKE KPNFDSEMES VCNALEAVNL 300 RTTLSPRLLP QCLSRNQRAA LAEIANVLRA VCHAHRLPLA LTWIPCCYSE RDVDDIIKVR 360 VRGGNTNSNG RCILCIEETA CYVNHKDMEG FVHACSECCL VEGQGIAGKA LTSNHPFFSA 420 DVKAYDISEY SLVHHARKFA LNAAVAIRLR STYTGDDDYI LEFFLPINMK GSSEQQLLLN 480 NLSGTLQRIC SSLRRVSDAE LISTEGAEAG FQKGMDPNFL PVAMSRRSSQ SALSTSDLSS 540 ADRMPSSMTD TEADAMGADG PCDQAMTGYR KQQEKKKSTA EKNVSLSVLQ QYFSGSLKDA 600 AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDPATGG 660 FVPAGSVIQD FDVRKNLIFS EKNLSVRNPE TMSQGAFLVP SAPCPDGEKF IVKLEEDECS 720 MGGNQVGPVQ SMLIPNTYKG ETEKSVTMPV IDCSEDSKSV AVNARSFEGS NLGSQAWAFQ 780 ENVSSASFVT KEDKNWVCHF VSESSKSLAA ADDMDTRMEA DDGNIEHNQP SCSSMTDSSN 840 GSGSLVHASS SSYLSFEEGK HSKVKVNCGE SGSKITVKAS YREDTIRFKF DPCAGFFQLY 900 EEVGKRFKLQ SGTFQLKYLD DEEEWVMLVN DSDLQECLEI LDDIGKRSVK FLVRDLPCPM 960 GSSGSSNCFL GTGS*

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence Send to blast

MEGWVLTDGS IKNSISEDPL INISELMNFD TYAGWCNSPS APDQMSTSHG LSTMPSVPYS  60
SFDSLNFSAQ NSAALPDRAG TFNGMEFSYS CEDRLVVLPG DSQVGCSLNS TDADDSGAKQ  120
GNGSYGQSLA SDKAMCMISR SVGRTLDERM LRALSLFKDS SGGGILAQVW VPVKLGDQFM  180
LSTSDQPYLL DQMLTGYREV SRKFTFSAEM KEGSFLGLPG RVFSSRVPEW TSNVSYYNKA  240
EYLRGKYAAD HEVRGSLALP VFDVPDMYCC AVLELVTVKE KPNFDSEMES VCNALEAVNL  300
RTTLSPRLLP QCLSRNQRAA LAEIANVLRA VCHAHRLPLA LTWIPCCYSE RDVDDIIKVR  360
VRGGNTNSNG RCILCIEETA CYVNHKDMEG FVHACSECCL VEGQGIAGKA LTSNHPFFSA  420
DVKAYDISEY SLVHHARKFA LNAAVAIRLR STYTGDDDYI LEFFLPINMK GSSEQQLLLN  480
NLSGTLQRIC SSLRRVSDAE LISTEGAEAG FQKGMDPNFL PVAMSRRSSQ SALSTSDLSS  540
ADRMPSSMTD TEADAMGADG PCDQAMTGYR KQQEKKKSTA EKNVSLSVLQ QYFSGSLKDA  600
AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLRKIQT VLDSVQGVEG GLKFDPATGG  660
FVPAGSVIQD FDVRKNLIFS EKNLSVRNPE TMSQGAFLVP SAPCPDGEKF IVKLEEDECS  720
MGGNQVGPVQ SMLIPNTYKG ETEKSVTMPV IDCSEDSKSV AVNARSFEGS NLGSQAWAFQ  780
ENVSSASFVT KEDKNWVCHF VSESSKSLAA ADDMDTRMEA DDGNIEHNQP SCSSMTDSSN  840
GSGSLVHASS SSYLSFEEGK HSKVKVNCGE SGSKITVKAS YREDTIRFKF DPCAGFFQLY  900
EEVGKRFKLQ SGTFQLKYLD DEEEWVMLVN DSDLQECLEI LDDIGKRSVK FLVRDLPCPM  960
GSSGSSNCFL GTGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_9.328

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907023.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A061ER47	0.0	A0A061ER47_THECC; Plant regulator RWP-RK family protein, putative isoform 1
STRING	evm.model.supercontig_9.328	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_9.328

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]