PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_9.285 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28205 Da PI: 5.886 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.9 | 1.1e-25 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ +r++tr gCka++++ ++ g+w vtk+ evm.model.supercontig_9.285 78 DFYYEYAKRTGFTLRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHMLrKDRVLPPRPVTREGCKAMIRLAARDGGTWIVTKF 159 6******************************************998822333449*************************** PP FAR1 82 eleHnHela 90 + eHnH+l+ evm.model.supercontig_9.285 160 VREHNHKLM 168 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-23 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVLHSVGTLM PETGSGNDYL DGDRISDDEA YDAFVKPEAN AHEPPGINDS GRGLSTGDYE 60 ILEPRTGMTF LSLDDARDFY YEYAKRTGFT LRTNRIRHSL KNMAIIGRDF VCSREGFRAA 120 KHMLRKDRVL PPRPVTREGC KAMIRLAARD GGTWIVTKFV REHNHKLMNN CKFPGELPIV 180 NILSEEEKDK KIQELYDELQ CERERCAAFR QQLHTILKDL EEHADFMSIR VEDIVNSLKE 240 IELDGL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_9.285 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906952.1 | 1e-180 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2H5QLK3 | 1e-116 | A0A2H5QLK3_CITUN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_9.285 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16776 | 8 | 11 | Representative plant | OGRP8956 | 5 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 6e-43 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_9.285 |