PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.186
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 372aa    MW: 39919.1 Da    PI: 8.5509
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.186genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.6e-124975127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                 ++ + C +++rtG+C yG+rC+++H++
  evm.model.supercontig_9.186 49 PGVPDCAYYMRTGFCGYGARCRYNHPR 75
                                 5789*********************96 PP
2zf-CCCH40.83.5e-1396120327
                                  S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                  +++C+f+++tGtCk+G++CkF+H++
  evm.model.supercontig_9.186  96 EPPCQFYLKTGTCKFGASCKFHHPK 120
                                  79*********************96 PP
3zf-CCCH375.5e-12141166227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                  ++++C+++++tG+Ck+G +CkF+H++
  evm.model.supercontig_9.186 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                                  7899********************97 PP
4zf-CCCH36.96.1e-12297323127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                  +++++C++++rtG Ck+G++C+++H++
  evm.model.supercontig_9.186 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323
                                  5799*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1924876IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90193121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-696121IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-598119IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817296324IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5302324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MELYGRNAGR NGSQSGHQPE WSSGGPETGL EESMWQLGLG SGEAYPERPG VPDCAYYMRT  60
GFCGYGARCR YNHPRNRAAV EAAVRATGEY PERIGEPPCQ FYLKTGTCKF GASCKFHHPK  120
NAGGSMSNVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY  180
PPVQSPSVPM PEQYGGASTS LRVARPPLLP GSYVQGAYGP MLVSPGVFSI QGWSPYSAPV  240
SPVPSPGAQP TVGATSLYGV TQLSSSTPSL GGAYPSLPSS AGPLGNSQRE QTFPERPGEP  300
ECQYYLRTGD CKFGSSCRYH HPRDRIPPRT NCALSPIGLP LRPGCKLVLS TCKMGTVSLE  360
VHVNLIIPWE Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906884.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1R3KHY00.0A0A1R3KHY0_9ROSI; Zinc finger, CCCH-type
STRINGevm.model.supercontig_9.1860.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-176C3H family protein