PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.175
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CO-like
Protein Properties Length: 384aa    MW: 43183.1 Da    PI: 4.8622
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.175genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.8e-071962239
                     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                 ++r C+ +++  + l+C+ ++  lC +C  e H+       H++
  evm.model.supercontig_9.175 19 QKRLCDYCNNTTALLYCRADSAKLCFSCDREVHSAnqlftkHSR 62
                                 7899******99*********************65777777776 PP
2zf-B_box33.58.5e-1162107242
                     zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                  + + C+ +++ ++++fCe+ q+ lC++C  e+H +      H+++p+
  evm.model.supercontig_9.175  62 RSQLCDVCDNSPASIFCETEQSVLCQNCDWETH-NlsvslvHDRRPI 107
                                  5689*****************************.6689999988876 PP
3CCT39.32.3e-143463731643
                          CCT  16 kFeKkirYesRKavAesRpRvKGrFvkq 43 
                                  +++K+irYesRK++Ae R R+KGrF+k 
  evm.model.supercontig_9.175 346 RYDKQIRYESRKVRAEGRTRIKGRFAKV 373
                                  69************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.5E-141865IPR000315B-box-type zinc finger
PROSITE profilePS5011911.1211865IPR000315B-box-type zinc finger
PfamPF006438.1E-61963IPR000315B-box-type zinc finger
CDDcd000212.97E-72165No hitNo description
PROSITE profilePS5011910.93661107IPR000315B-box-type zinc finger
PfamPF006433.0E-863107IPR000315B-box-type zinc finger
CDDcd000211.02E-76594No hitNo description
SMARTSM003360.03766107IPR000315B-box-type zinc finger
PROSITE profilePS5101710.06331373IPR010402CCT domain
PfamPF062032.9E-9346373IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MKPTDSLPEN PAMKSRNQQK RLCDYCNNTT ALLYCRADSA KLCFSCDREV HSANQLFTKH  60
SRSQLCDVCD NSPASIFCET EQSVLCQNCD WETHNLSVSL VHDRRPIEGF TGCPTVTELV  120
AIVGLEGLGK KALFSSEDDG KLTGLNQSDI DGLSELLVWE TPTFTSLDDL IVSGELDHNF  180
RAMDVPSLPN RNAACGQHKE DILSQLRELA KSENLSYDNE DAEPVVNFQL LATEWNMQHG  240
NTFVGSQHEE DQISFPTCQA AGFKWIGDRD EPADQDFLPS LLQKYIREDS TISNKLIDIS  300
GSINQTNDVH ESISQEPISN KTLPPFPRVA QHEFLNSQER DSAISRYDKQ IRYESRKVRA  360
EGRTRIKGRF AKVDRGNTDF KIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.175
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907024.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A1Q3CT031e-141A0A1Q3CT03_CEPFO; Zf-B_box domain-containing protein/CCT domain-containing protein
STRINGevm.model.supercontig_9.1750.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Representative plantOGRP7906812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.17e-95B-box type zinc finger protein with CCT domain