PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_9.105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARR-B | ||||||||
Protein Properties | Length: 643aa MW: 70416.7 Da PI: 5.7975 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 26.5 | 1.4e-08 | 143 | 164 | 1 | 22 |
G2-like 1 kprlrWtpeLHerFveaveqLG 22 kpr++W+ eLH++Fv av+qLG evm.model.supercontig_9.105 143 KPRVVWSVELHQQFVAAVNQLG 164 79*******************5 PP | |||||||
2 | G2-like | 48.7 | 1.7e-15 | 193 | 224 | 24 | 55 |
G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +++A+Pk+ilelm+v gLt+e+v+SHLQkYRl evm.model.supercontig_9.105 193 HHEAVPKKILELMNVAGLTRENVASHLQKYRL 224 689****************************8 PP | |||||||
3 | Response_reg | 48.4 | 5.2e-17 | 6 | 73 | 41 | 109 |
HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 ++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + + Ga d+l Kp+ +e+l + evm.model.supercontig_9.105 6 KNGFDIVISDVHMPDMDGFKLLERVGLEM-DLPVIMMSADESKSVVMKGVTHGACDYLIKPVRIEALKN 73 444**********************6644.8**********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 30.185 | 1 | 79 | IPR001789 | Signal transduction response regulator, receiver domain |
PIRSF | PIRSF036392 | 1.4E-137 | 1 | 634 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 7.4E-27 | 2 | 104 | No hit | No description |
SuperFamily | SSF52172 | 1.18E-21 | 5 | 89 | IPR011006 | CheY-like superfamily |
CDD | cd00156 | 1.76E-16 | 5 | 78 | No hit | No description |
Pfam | PF00072 | 4.1E-14 | 6 | 73 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF46689 | 7.53E-15 | 140 | 168 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-27 | 142 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-13 | 194 | 224 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.53E-15 | 197 | 228 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MLRENKNGFD IVISDVHMPD MDGFKLLERV GLEMDLPVIM MSADESKSVV MKGVTHGACD 60 YLIKPVRIEA LKNIWQHVVR KRKNEWKELE QSGSVEEGDR QQKQTEEADY SSSVNEGNWR 120 SSKKRKDEED ETEDRDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDSMNL LPESPNFLIL 180 VGCMFICDLN NAHHEAVPKK ILELMNVAGL TRENVASHLQ KYRLYLRRLS GVSQHQSNLN 240 NSFINPQEAN FGPLSSLNGI DLQTLAVTGQ LPAQSLATLQ AAGLGRSSAK SGISMPIVDQ 300 RNLFSFENPK LRFAEAQQQH MTNSKQMNLL HGIPTAMEPK QLASLHHSAQ SIGNMNMQVN 360 THGGQSSQNN ALLMQMAQSQ SRGQILYENS GSHATRLPSS ITQPILTSNG IGASVSARTG 420 IPDNGRGGAY NPVSQASSML NFPLNHNAEL PGNSFPLGNA PGLSSLASKG AFQEDVNSDI 480 KGSGGFMPSY DIFNDLHQHK PQDWELQNVG LTFDASQHSN PLQSSLDVTP SVLVSQGFSS 540 NQRNGQNGNA TAVGKAMFST GEGPEHGNVQ NVVNQNLNSL FTDNSIRVKS ERVSEARIPS 600 SLFPDQFGQE DLMSALLKQQ EGIGPAENEF DFDGYSMDNI PV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_9.105 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906934.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A061EWK1 | 0.0 | A0A061EWK1_THECC; Two-component response regulator | ||||
STRING | evm.model.supercontig_9.105 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_9.105 |