PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_898.4
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 833aa    MW: 91150.7 Da    PI: 5.1759
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_898.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-097198127
                                 --S---SGGGGTS.--TTTTT-SS-SSS CS
                      zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                                 +kt+lC++f+r+   C++G++C++aHg+
  evm.model.supercontig_898.4 71 WKTSLCSYFRRNSgSCSHGSSCRYAHGE 98
                                 8**********989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-1367102IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-767103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5257099IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-57098IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-77198IPR000571Zinc finger, CCCH-type
CDDcd005901.45E-6168233No hitNo description
SuperFamilySSF549283.6E-7171245IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3303.6E-7172233IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168738.275291833IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533357.62E-42294319IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.62E-42351483IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.62E-42514639IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1504.0E-55554639IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138473.8E-9583641IPR025714Methyltransferase domain
CDDcd024402.17E-6585639No hitNo description
Gene3DG3DSA:3.40.50.1504.0E-55717772IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.62E-42720773IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.8E-6724768IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300728760IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1504.0E-55808832IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.62E-42817832IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MEPSPDNQLS AVQTLDPATN PPAEIPQSDP QLTDDANPVG EKRKRDQDEE AEGEQSANQT  60
VSSDSTLHPL WKTSLCSYFR RNSGSCSHGS SCRYAHGEEE LRLRPDNTWD PTSERARKAR  120
KTENSANCEA GGEEEDEVLM TEMVDDDGDG GGGGDNSECV LDPGFSKCLV HLPRKWDSDQ  180
LRKFLKEQAV QFKSAKKKKG MIIGFVGFES AEQLNTAIEV LEGKSIGNKN LKVADVLPRS  240
YDEKIKSAMA AAVKPSLAGD SVTSNAAEDE TNDDVSALDS KISKAKRCRD VVTPLADMSY  300
SEQLEHKKNS LQQMLKKLTK NARKACPKGV SLPEWILKAR EIGGLPCKLE GIIESPLVNG  360
YRNKCEFSIG YSVQGRPTVG FLLGNFREGV TAVEEPLDCP NVSRIACKYA SIFQEFIQQS  420
SFPVWNRFKN TGFWRQLTVR EGRKPVDVTG VEDFEANISE VMLIVQICSL GFDDAQITTE  480
FARLAKAFAE GARGTSNQIS IAIMLLLMQD HQGISNCAPA DAPLRSLPIP ISEIHSEQEA  540
GSNIVEPEFM IILTIFDLVN TLAAEKLYSL AGDWASLGPD TLLFDICCGT GTIGLTLAHR  600
VGMVVGIEMN ASAVSDAHRN AEINGIKNCR FVCAKAEDVM GSLLKEYTDM SKKQDEISHV  660
PSSVDRDVFT PDETSISTNN FSGSSHEPEN GKNASGDSEN GCEECQSCKV DAGKSSVPRF  720
KNIVAIVDPP RVGLHPTVIK ALRTHSHLRR LVYISCNPES LVANAIELCT PSPDKVEKGN  780
KNNRGWRNMS SAGLARHRAK SMPISEPFIP VKAMAVDLFP HTQHCEMVML LEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5xj2_A2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5xj2_B2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5xj2_C2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5xj2_D2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-14548646274372Uncharacterized RNA methyltransferase SP_1029
5zq1_A2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5zq8_A2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5zq8_B2e-14548646273371Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-14548646274372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_898.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899116.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1U8PZT30.0A0A1U8PZT3_GOSHI; zinc finger CCCH domain-containing protein 24-like
STRINGevm.model.supercontig_898.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120031516
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]