PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_89.42
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 335aa    MW: 37414.9 Da    PI: 5.5421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_89.42genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20192242255
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f+ta eAaka+++a+ kl+g
  evm.model.supercontig_89.42 192 HYRGVRQRP-WGKFAAEIRDPNKRG--TRIWLGTFDTAIEAAKAYDRAAFKLRG 242
                                  7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-32191251IPR001471AP2/ERF domain
SMARTSM003801.8E-37192256IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23192251IPR016177DNA-binding domain
PROSITE profilePS5103224.184192250IPR001471AP2/ERF domain
CDDcd000184.87E-32192250No hitNo description
PfamPF008471.2E-14192242IPR001471AP2/ERF domain
PRINTSPR003671.5E-13193204IPR001471AP2/ERF domain
PRINTSPR003671.5E-13232252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MATPNEVMTL ESIEKHLFGE NSPVGTTPWM SEAKPGVSVS SSAYSQTSSS GSSLTAASKF  60
QCLDETADFF HLPQNLAESG SDLFEFESKP QIIDLTTPKA TNSNEQLLEF EFQPCFFEFD  120
SKPQIPSQSN NFFDFQGITE TPSSSSPQWN RKPSLKISLP NKVEWIQFTN PIPEQDQARE  180
ARRRSSIEQK RHYRGVRQRP WGKFAAEIRD PNKRGTRIWL GTFDTAIEAA KAYDRAAFKL  240
RGSKAILNFP LEAGRCDEGG ENKRPREEDG EERAAKKVAK TGNDVIRGRD EDGPLTPSKW  300
MEVWDGDVKG LFNVPLLSPL SPHPPLGFPQ LMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-29191251161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_89.42
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893680.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A0D2N0W99e-96A0A0D2N0W9_GOSRA; Uncharacterized protein
STRINGevm.model.supercontig_89.420.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-70ethylene responsive element binding factor 5