PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_87.85
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 486aa    MW: 53219.8 Da    PI: 6.6451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_87.85genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-152164146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                 +g +++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
  evm.model.supercontig_87.85 21 KGTFSPEEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNFWNT 64
                                 799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.286115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-10227IPR009057Homeodomain-like
SuperFamilySSF466893.76E-20271IPR009057Homeodomain-like
PROSITE profilePS5129425.3731670IPR017930Myb domain
SMARTSM007174.9E-162068IPR001005SANT/Myb domain
PfamPF002491.2E-142164IPR001005SANT/Myb domain
CDDcd001671.69E-112364No hitNo description
Gene3DG3DSA:1.10.10.604.9E-222867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MRCGKSCRLR WANHLRPNLK KGTFSPEEER IIIELHAKLG NKWARMASQL PGRTDNEIKN  60
FWNTRMKRRQ RAGLPLYPQD IQDQAAVFHL QQQRQHQQQQ RQTKRPGGSS PMSSMLSSPT  120
QPRKRSYSPS FSLIDPTRPS ANPLRTHHHF TSSINYSPSN NQFKIYSDHT AGNSNNAGFA  180
LSLSPVSPYR SSLSPTLYNT QNFPSQSISA PSFQFSTSGN LDTKMSYSSL LMGNLQIEPF  240
SFVCGLGSEL PSYQTTVAEA LTPASSNTSG GAYWMAPSSG STNNDQYEID TEMASAGNGT  300
GLLDDLLQES NALSRHEKSN WCCSESSMLT DKGKGVVVDP SIEKLQEEED NHENHGLDSA  360
LSLRISSSKA NDLENQWDHE LNSSPSSIGT KAIYNDPAAG AAAAAEMSSM DDDLLSLLNN  420
FPSSSPLPDW YLGSKYSSEG SSSGSITTKL VVDAQNNMET SKTAGAPQLD WTLGSCYWNN  480
MPGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-2226937104C-Myb DNA-Binding Domain
1msf_C2e-2226937104C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_87.85
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893708.10.0transcription factor MYB101
TrEMBLA0A199UBL71e-113A0A199UBL7_MANES; Uncharacterized protein
STRINGevm.model.supercontig_87.850.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-57myb domain protein 101