PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_865.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 309aa MW: 33732.2 Da PI: 6.2338 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.8e-17 | 207 | 241 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + +Tp+WR gp g+ktLCnaCG++y++ +l evm.model.supercontig_865.1 207 CLHCAAESTPQWRTGPMGPKTLCNACGVRYKSGRL 241 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.2E-72 | 19 | 290 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.11 | 201 | 237 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.6E-15 | 201 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-14 | 204 | 265 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.5E-14 | 205 | 239 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.97E-12 | 206 | 253 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 207 | 232 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.6E-14 | 207 | 241 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MEAPGFLAGG YYGAATRGFS SENRVPDQKN CENFTIDDLL DFSNDMILTD GFFDNVTGNS 60 TVTSTVSAVD ISDSSFSVTA DDHSSSFGHR SVGDDSHFSA ALVCVPDDEM AELEWFSNFI 120 EDSFSTEQNL NNLHILSGSK PPTPDSSSSS FNCTSFSPET PLPGKTRSKR SRVAPCDWST 180 RLLILHSKTT PIKNRERPNP DTPARKCLHC AAESTPQWRT GPMGPKTLCN ACGVRYKSGR 240 LVPEYRPAAS PTFVSTKHSN SHRRVMELRR QKELQAAQQQ FVGQSSIFGV SNGGDEFLIN 300 HRGGPEFS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_865.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021899635.1 | 0.0 | GATA transcription factor 4-like | ||||
TrEMBL | A0A1Q3CBT2 | 1e-128 | A0A1Q3CBT2_CEPFO; GATA transcription factor | ||||
STRING | evm.model.supercontig_865.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5682 | 27 | 49 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-60 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_865.1 |