PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_86.17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 577aa    MW: 64756.1 Da    PI: 5.8937
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_86.17genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.22.1e-24200253155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  k+r++W+ eLH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  evm.model.supercontig_86.17 200 KARVVWSVELHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
                                  68*******************.9*******************************8 PP

2Response_reg83.37.4e-28201281109
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
                 Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                                  vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  
  evm.model.supercontig_86.17  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALKLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVD 99 
                                  89*********************.***************999999**********************6644.8********* PP

                                  TTHHHHHHHHHTTESEEEESS--HHHHHH CS
                 Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                                  ge + + + ++ Ga d+l Kp+ ++el++
  evm.model.supercontig_86.17 100 GETSRVMKGVQHGACDYLLKPIRMKELRN 128
                                  **************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.0E-1482533IPR017053Response regulator B-type, plant
SuperFamilySSF521729.11E-3617141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4417157No hitNo description
SMARTSM004481.4E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.17919134IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2520129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.19E-3021134No hitNo description
SuperFamilySSF466896.81E-18198257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-28198258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-21200253IPR006447Myb domain, plants
PfamPF002495.2E-8202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MIENGFSSPR SDSFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCCLA REALKLLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKKIHE VRDIESLEGI DSIGMTRNGS EQSDDAHLLS AEDMTLIKKR  180
KDVENRHDDK DLSDPSSTKK ARVVWSVELH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLSRLQK ENELKSSFGG IKHSDSPPKD ATGSYGLQNS INVHPNDVLD  300
GSHGLSGGNS LLQSVDRNTD EVDRKGIASV ATTESKRSLA VDVSNPQKPR CAQMGFDHPL  360
ASLEPEVNFM TFGSNVPAQY SWSEIPGVQF KQDHKPLEFE ESLSQLPLSG LHHHVQTDYL  420
PPAASVSPGP SITERDVKHS SNRCKSNHVD PISSSSANDL FPVQSKSQMV SQSAFQPVNT  480
TSSDIENQGF NQTYVTNLES IQRNLNWGIN SPYASLNEDL QFCLLQGDCY SMNLGLQGVE  540
FTDYNNLELF TEVPIHLYDA MRFDCDHLYA KQNMLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17196258163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_86.17
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893896.10.0two-component response regulator ARR11
SwissprotQ9FXD61e-151ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A061E7480.0A0A061E748_THECC; Two-component sensor histidine kinase bacteria, putative isoform 1
STRINGevm.model.supercontig_86.170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-134response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]