PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_86.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARR-B | ||||||||
Protein Properties | Length: 577aa MW: 64756.1 Da PI: 5.8937 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.2 | 2.1e-24 | 200 | 253 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv+av+q+ G +k Pk+il+lm+v+ Lt+e+v+SHLQkYRl evm.model.supercontig_86.17 200 KARVVWSVELHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253 68*******************.9*******************************8 PP | |||||||
2 | Response_reg | 83.3 | 7.4e-28 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtah 80 vl+vdD+p+ +++l+++l+k y ev+++ ++eal+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ evm.model.supercontig_86.17 20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALKLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVD 99 89*********************.***************999999**********************6644.8********* PP TTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 81 geeedalealkaGakdflsKpfdpeelvk 109 ge + + + ++ Ga d+l Kp+ ++el++ evm.model.supercontig_86.17 100 GETSRVMKGVQHGACDYLLKPIRMKELRN 128 **************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.0E-148 | 2 | 533 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 9.11E-36 | 17 | 141 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.5E-44 | 17 | 157 | No hit | No description |
SMART | SM00448 | 1.4E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.179 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.7E-25 | 20 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.19E-30 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 6.81E-18 | 198 | 257 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-28 | 198 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-21 | 200 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-8 | 202 | 252 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MIENGFSSPR SDSFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCCLA REALKLLRER 60 KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP 120 IRMKELRNIW QHVFRKKIHE VRDIESLEGI DSIGMTRNGS EQSDDAHLLS AEDMTLIKKR 180 KDVENRHDDK DLSDPSSTKK ARVVWSVELH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT 240 RENVASHLQK YRLYLSRLQK ENELKSSFGG IKHSDSPPKD ATGSYGLQNS INVHPNDVLD 300 GSHGLSGGNS LLQSVDRNTD EVDRKGIASV ATTESKRSLA VDVSNPQKPR CAQMGFDHPL 360 ASLEPEVNFM TFGSNVPAQY SWSEIPGVQF KQDHKPLEFE ESLSQLPLSG LHHHVQTDYL 420 PPAASVSPGP SITERDVKHS SNRCKSNHVD PISSSSANDL FPVQSKSQMV SQSAFQPVNT 480 TSSDIENQGF NQTYVTNLES IQRNLNWGIN SPYASLNEDL QFCLLQGDCY SMNLGLQGVE 540 FTDYNNLELF TEVPIHLYDA MRFDCDHLYA KQNMLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-17 | 196 | 258 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_86.17 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893896.1 | 0.0 | two-component response regulator ARR11 | ||||
Swissprot | Q9FXD6 | 1e-151 | ARR11_ARATH; Two-component response regulator ARR11 | ||||
TrEMBL | A0A061E748 | 0.0 | A0A061E748_THECC; Two-component sensor histidine kinase bacteria, putative isoform 1 | ||||
STRING | evm.model.supercontig_86.17 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8066 | 27 | 40 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-134 | response regulator 11 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_86.17 |
Publications ? help Back to Top | |||
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