PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_85.82 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | G2-like | ||||||||
Protein Properties | Length: 411aa MW: 46648.6 Da PI: 9.628 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 8.8e-32 | 207 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ evm.model.supercontig_85.82 207 KTRIRWTQDLHEKFVECVNRLGGTEKATPKEILKLMDSNGLTIFHVKSHLQKYRI 261 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.015 | 204 | 264 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-17 | 205 | 261 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-28 | 206 | 262 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-23 | 207 | 262 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-9 | 211 | 260 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-7 | 292 | 313 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MNTQKITCQE RIRLTQGLIS DCKVDFVNHS SQFSGTQQRS DMGIQIQAPA IEGGISQLHY 60 QFRSPNNILS PFESPTYDFY ATEGCMGFPL YKSETTAVSM DSIEQFNTSS ELTNTLQSLV 120 KSQYCGRKFS RSPSLDQNRF LVDEATDFGR NKSRVALKGN QDHRIFCNSN YNSPLVRQSF 180 YAKQEKQQSL RLSPVKSVKN GSELVSKTRI RWTQDLHEKF VECVNRLGGT EKATPKEILK 240 LMDSNGLTIF HVKSHLQKYR IAKYMSDSAE GKSEKRSSTN YIPYQLDTKT GMQIKEALEL 300 QLDIQRRLHE QLEDLRTTLS GLIFSSKPVT KHPLGNSKRE VSCPQFIALS PYGYEFLSAR 360 GRRIRESALC NTKRRTKKKN GGYEEEEDGG DGRCSNFDAG TITYFARSSR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-21 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-21 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-21 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-21 | 207 | 264 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 373 | 379 | RRTKKKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_85.82 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894006.1 | 0.0 | myb family transcription factor PHL5 | ||||
TrEMBL | A0A061F4K8 | 2e-93 | A0A061F4K8_THECC; Myb-like HTH transcriptional regulator family protein, putative isoform 1 | ||||
STRING | evm.model.supercontig_85.82 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 1e-57 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_85.82 |