PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_85.82
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 411aa    MW: 46648.6 Da    PI: 9.628
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_85.82genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.8e-32207261155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+
  evm.model.supercontig_85.82 207 KTRIRWTQDLHEKFVECVNRLGGTEKATPKEILKLMDSNGLTIFHVKSHLQKYRI 261
                                  68****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.015204264IPR017930Myb domain
SuperFamilySSF466897.7E-17205261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-28206262IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-23207262IPR006447Myb domain, plants
PfamPF002497.3E-9211260IPR001005SANT/Myb domain
PfamPF143792.2E-7292313IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MNTQKITCQE RIRLTQGLIS DCKVDFVNHS SQFSGTQQRS DMGIQIQAPA IEGGISQLHY  60
QFRSPNNILS PFESPTYDFY ATEGCMGFPL YKSETTAVSM DSIEQFNTSS ELTNTLQSLV  120
KSQYCGRKFS RSPSLDQNRF LVDEATDFGR NKSRVALKGN QDHRIFCNSN YNSPLVRQSF  180
YAKQEKQQSL RLSPVKSVKN GSELVSKTRI RWTQDLHEKF VECVNRLGGT EKATPKEILK  240
LMDSNGLTIF HVKSHLQKYR IAKYMSDSAE GKSEKRSSTN YIPYQLDTKT GMQIKEALEL  300
QLDIQRRLHE QLEDLRTTLS GLIFSSKPVT KHPLGNSKRE VSCPQFIALS PYGYEFLSAR  360
GRRIRESALC NTKRRTKKKN GGYEEEEDGG DGRCSNFDAG TITYFARSSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-21207264158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-21207264158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-21207264158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-21207264158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373379RRTKKKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_85.82
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894006.10.0myb family transcription factor PHL5
TrEMBLA0A061F4K82e-93A0A061F4K8_THECC; Myb-like HTH transcriptional regulator family protein, putative isoform 1
STRINGevm.model.supercontig_85.820.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.21e-57G2-like family protein