PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_84.49
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YA
Protein Properties Length: 238aa    MW: 26128.1 Da    PI: 9.6197
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_84.49genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.41e-3265121158
                    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                  +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+RgsgGrF
  evm.model.supercontig_84.49  65 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF 121
                                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3563124IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.05664124IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-2866121IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-246789IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068606989IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-2498121IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTRDECLSQP PQLELVGHSI ACASNLYQDP YYGRMMAAYG HQPLVYPPYV GMPHARMPLP  60
LEMAQEPVYV NAKQYQGILR RRQARAKAEL EKKLIKVRKP YLHESRHQHA MRRARGSGGR  120
FAKKTDCEAS QHTSEEKGTG SGPGQSSHSP TSSGSEPFPF DTAGTRNSSV GQNATKGSQV  180
HDMHRMNGSS GYQSQGGLQA STYHSHLGER RDEGDCSGQQ WGSMSSNQAS QRPLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-1965121258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_84.49
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894121.11e-177nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_021894122.11e-177nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_021894123.11e-177nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_021894124.11e-177nuclear transcription factor Y subunit A-1-like isoform X1
SwissprotQ945M95e-75NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A067F5721e-118A0A067F572_CITSI; Uncharacterized protein
TrEMBLV4U5J81e-118V4U5J8_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_84.491e-176(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Representative plantOGRP9696612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-72nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]