PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_84.41
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 550aa    MW: 61996 Da    PI: 4.4936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_84.41genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.25.2e-43501762128
                          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  ppG+rF P+d el+ +yL++k+ + +++  + i +v++y+++P dL   + + +ekewyfF++rdkky++g+r++r++ +gy
  evm.model.supercontig_84.41  50 PPGIRFCPNDRELIRDYLRNKALNLPMHR-SYIIDVNVYDYNPFDLAeICKDCGEKEWYFFTPRDKKYPKGNRPSRKAGNGY 130
                                  9*************************999.789*************8345556999************************** PP

                          NAM  83 WkatgkdkevlskkgelvglkktLvfykgra.pkgektdWvmheyrl 128
                                  Wkatg dk++++ +g+++g kk Lvfy+g+  ++g+kt+W+mheyrl
  evm.model.supercontig_84.41 131 WKATGADKDITD-NGKTIGHKKALVFYTGKPlESGRKTNWIMHEYRL 176
                                  ************.999***********99653789**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5446203IPR003441NAC domain
PROSITE profilePS5100553.46349203IPR003441NAC domain
PfamPF023653.8E-2450176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDTDPELAPL FNSLPDPSSS THLQQLTTDH AASSSGNNGY DQRYEFGCFP PGIRFCPNDR  60
ELIRDYLRNK ALNLPMHRSY IIDVNVYDYN PFDLAEICKD CGEKEWYFFT PRDKKYPKGN  120
RPSRKAGNGY WKATGADKDI TDNGKTIGHK KALVFYTGKP LESGRKTNWI MHEYRLSNPP  180
APANQSHDNM RLDDWVLCRI YQKIRKNMRA RSEEIEQEEN ETGNPRERQQ EADRYRQLNE  240
GQFLNPAPRS DHQLIESQAL NPAPQGDHQL NEGRFLNPAP QGDHQLIESQ ALNPAPQGDH  300
QLIEGQFLNS APLGDHQFNE DQFLNPASQG DHQLNEDQFL NSAALGDHQL NEGQFLNPAS  360
QDDHQLNEDQ FLNSAALGDH QLHEGQFLNP ASQGDHQLNE DQFLNPATLG DRQLIEGQFS  420
NPAPLDDQLT TLNSHDQVLA PPPPYHNYQV MNNNFNGDQH LLQQPQVLPS ASGPLVEMFD  480
PASPLPISMM PPAQVPAPPM EEVPYVPAQE MENEDNIFTS QFYLENSNLF SCLDLENHDL  540
IFGGGSSGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-474920320168NAC domain-containing protein 19
3swm_B1e-474920320168NAC domain-containing protein 19
3swm_C1e-474920320168NAC domain-containing protein 19
3swm_D1e-474920320168NAC domain-containing protein 19
3swp_A1e-474920320168NAC domain-containing protein 19
3swp_B1e-474920320168NAC domain-containing protein 19
3swp_C1e-474920320168NAC domain-containing protein 19
3swp_D1e-474920320168NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_84.41
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894084.10.0NAC transcription factor 47-like
STRINGevm.model.supercontig_84.410.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-52NAC family protein