PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_84.12
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 462aa    MW: 51747.6 Da    PI: 5.6814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_84.12genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS479.22e-146494571373
                         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                  l++lLl+cA +v+sg+le+a+ +L+++s+laspdgd+mqR+a+yfteALa r+++s+++lykal++++ +     ee++++k
  evm.model.supercontig_84.12  49 LIHLLLTCASHVASGSLENANIALEQISQLASPDGDTMQRIASYFTEALADRILKSWPGLYKALNSTKLT--LACEEIMVRK 128
                                  689*************************************************************999998..699******* PP

                         GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                                  lf+e++P+lk++++++NqaI+ea+ege++vH+iD+++++ +QW+aLlq+L+sRpegpp+lRiT+v++    +ke l ++++r
  evm.model.supercontig_84.12 129 LFFEMFPFLKVAFVLTNQAIVEAMEGEKMVHVIDLNAGESAQWIALLQTLNSRPEGPPHLRITAVHQ----RKEVLDQIAHR 206
                                  *******************************************************************....9********** PP

                         GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................ 214
                                  L++ Ae+l++pf+fn+ v++rle+l++e+Lrvk+gEala+++vl+lh+ll                                
  evm.model.supercontig_84.12 207 LTEEAEKLDIPFQFNP-VVSRLENLDVEKLRVKTGEALAISSVLELHSLLapdselsrsksplalkspngihlqrvlqmnqs 287
                                  ****************.7**************************************************************** PP

                         GRAS 215 .............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                                                ++  ++ + d++L+++++lsPk++vv+eq+++hn++++++r+leal+ y+alfd+le++++r+s er 
  evm.model.supercontig_84.12 288 tlgellekdigngYSP--TSAKMDSFLNALWGLSPKLMVVTEQDSNHNGSTLMDRLLEALYSYAALFDCLESTVSRTSLERL 367
                                  *********9964333..3334699********************************************************* PP

                         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                                  kvE++++g+ei+n++acegaer+erhe+le+W +rl+ aGF++vpls++ + qa++ll+ ++ dgyr++ee+g++v++W+dr
  evm.model.supercontig_84.12 368 KVEKMMFGEEIKNIIACEGAERKERHEKLERWIQRLDLAGFGNVPLSYYGMLQARRLLEGFGCDGYRIKEENGCVVICWQDR 449
                                  ********************************************************************************** PP

                         GRAS 366 pLvsvSaW 373
                                  pL+svSaW
  evm.model.supercontig_84.12 450 PLFSVSAW 457
                                  ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.80623438IPR005202Transcription factor GRAS
PfamPF035146.9E-14449457IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVQMFQDEAS SSVTSSPLQF FSTMSVSPSL GSPYPWLKEL KSEERGLYLI HLLLTCASHV  60
ASGSLENANI ALEQISQLAS PDGDTMQRIA SYFTEALADR ILKSWPGLYK ALNSTKLTLA  120
CEEIMVRKLF FEMFPFLKVA FVLTNQAIVE AMEGEKMVHV IDLNAGESAQ WIALLQTLNS  180
RPEGPPHLRI TAVHQRKEVL DQIAHRLTEE AEKLDIPFQF NPVVSRLENL DVEKLRVKTG  240
EALAISSVLE LHSLLAPDSE LSRSKSPLAL KSPNGIHLQR VLQMNQSTLG ELLEKDIGNG  300
YSPTSAKMDS FLNALWGLSP KLMVVTEQDS NHNGSTLMDR LLEALYSYAA LFDCLESTVS  360
RTSLERLKVE KMMFGEEIKN IIACEGAERK ERHEKLERWI QRLDLAGFGN VPLSYYGMLQ  420
ARRLLEGFGC DGYRIKEENG CVVICWQDRP LFSVSAWSCR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-65324601380Protein SCARECROW
5b3h_D6e-65324601380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_84.12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894227.10.0LOW QUALITY PROTEIN: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_84.120.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]