PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_83.99
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 314aa    MW: 34947.4 Da    PI: 9.2087
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_83.99genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.12.1e-33702101128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 
                                  lp+G++F+Ptd+el+ e+L+ kv+ +       ++  e   +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+
  evm.model.supercontig_83.99  70 LPAGVKFDPTDQELL-EHLEGKVRCDArklhplID--EfipTLEGEnGICYTHPEKLP-GVRKDGLVRHFFHRPSKAYTTGT 147
                                  799************.99****9999855644322..22222333336**********.566666788************** PP

                          NAM  73 rknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                  rk+r+++      + +W++tgk+++v+  +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  evm.model.supercontig_83.99 148 RKRRKVHsdseggETRWHKTGKTRPVFI-GGKAKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 210
                                  ****855455544678************.99************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3856229IPR003441NAC domain
PROSITE profilePS5100533.29870229IPR003441NAC domain
PfamPF023651.5E-1571210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTWCSDCSDV QTLDTATNTP PLSSNKTTTA VIAAADRSLR PSLTKTCPSC GHQIKCHDQG  60
SGLINDLPGL PAGVKFDPTD QELLEHLEGK VRCDARKLHP LIDEFIPTLE GENGICYTHP  120
EKLPGVRKDG LVRHFFHRPS KAYTTGTRKR RKVHSDSEGG ETRWHKTGKT RPVFIGGKAK  180
GYKKILVLYT NYGKQKKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCGSAVI  240
KDMTHHPPKL KGQGHEGSNF KNSCSTTTTP NIDHHRHYYN PPFISFDQGG QNRSSSAQIL  300
PHFAVHDGSS FIP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_83.99
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894305.10.0NAC domain-containing protein 73
SwissprotO494591e-126NAC73_ARATH; NAC domain-containing protein 73
TrEMBLB9RVT01e-163B9RVT0_RICCO; Transcription factor, putative
STRINGevm.model.supercontig_83.990.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-128NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]