PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_83.75
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 413aa    MW: 46098.5 Da    PI: 7.8791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_83.75genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.61.2e-09122143526
                                  --SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   C+ f+r+G C++Gd C FaHg
  evm.model.supercontig_83.75 122 VCSEFRRGGGCSRGDECEFAHG 143
                                  7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.37E-6116147IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.911118145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5121145IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7122143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4150181IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484153177IPR000571Zinc finger, CCCH-type
SMARTSM003561.6153176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTTICAEQHK LLHHHHHHLK KPTIEIPPRK LLFTSNKTYD QLPSPDSPNM LNKHLPRNTP  60
TDNDSDSDSD DPYSTDHFRM YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRRFHYSG  120
TVCSEFRRGG GCSRGDECEF AHGVFECWLH PSRYRTEACK DGKNCKRKVC FFAHSPRQLR  180
ILPEVLGSNC TSNSYLSPIT NHIKTNGNSY SKGTPSCCCL FCRTVSESPT STLLGLSHLS  240
RSPSLSPPLS PVKERRASTA AVFSPFSRYS DRLGKKIGVG GYKEMLSELK NSLEAMTINE  300
VLSSSSPPST TSPSPLSLPG GNCSNSSSSI DVPWLEICFN GYQDFEQQKQ QLVNLSPSTP  360
IGRSGSGDLF DENFSRQHGS GDYEKILGIN NDNENGSGCP DVDLEWVNEL VM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_83.75
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894247.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA14e-99C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLU5FMC61e-112U5FMC6_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_83.750.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-81C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]