PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_83.103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 183aa MW: 20691.4 Da PI: 6.873 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 14 | 65 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++ql Le+ F+ n+++++e++ +LA+ lgL+ r+V +W+qNrRa++k evm.model.supercontig_83.103 14 KRLTQDQLMLLEKSFNTNHNLNTERKLKLAQMLGLPPRKVAIWYQNRRARQK 65 579************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 98.5 | 6.5e-32 | 13 | 102 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +rl+++q+ lLE+sF+++++L++erK +la+ Lgl pr+va+W+qnrRAR kt+ +E dy++L+ ++d++ +e++rLeke evm.model.supercontig_83.103 13 NKRLTQDQLMLLEKSFNTNHNLNTERKLKLAQMLGLPPRKVAIWYQNRRARQKTHTIELDYKTLQLELDNVLAEKTRLEKE 93 79******************************************************************************* PP HD-ZIP_I/II 84 veeLreelk 92 v+ Lr++l+ evm.model.supercontig_83.103 94 VDILRHQLD 102 *****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.52 | 7 | 67 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-17 | 9 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.41E-16 | 10 | 67 | No hit | No description |
SMART | SM00389 | 2.6E-15 | 10 | 71 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 14 | 65 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 16 | 65 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 42 | 65 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MDLNSHSTQK QENKRLTQDQ LMLLEKSFNT NHNLNTERKL KLAQMLGLPP RKVAIWYQNR 60 RARQKTHTIE LDYKTLQLEL DNVLAEKTRL EKEVDILRHQ LDTTRSMLLQ SNPSAAIRLP 120 SGSSCIDEDH ASSNCPANMT FSHNDDSIFI VEELYSCLIG PQGQPHTIGA VNNLLDCSAV 180 PQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_83.103 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894295.1 | 1e-134 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A2H5PT84 | 1e-58 | A0A2H5PT84_CITUN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_83.103 | 1e-133 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22993 | 3 | 3 | Representative plant | OGRP16366 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-31 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_83.103 |