PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_81.125
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 681aa    MW: 76042.4 Da    PI: 5.2619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_81.125genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.29.9e-473354801149
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL+ c +av+++d ++a++lL+++s+++s+ gd  qRla+yf++ L+arla++++++y al+++++s    +  l+a+
  evm.model.supercontig_81.125 335 LRTLLILCSHAVAANDRRAANELLKQISQHSSSVGDGSQRLAHYFANSLEARLAGTGTQIYTALSSKRNS---AVLMLKAY 412
                                   5789*********************************************************999999888...8999**** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgs 149
                                   +++   +P++k++ + aN++Il a+e+++++HiiDf+is+G +WpaL++ L+ Rp+gpp+lRiTg++ 
  evm.model.supercontig_81.125 413 QTYISSCPFMKIAIIFANHTILSAAEKATTLHIIDFGISYGYKWPALIHRLSMRPGGPPKLRITGIEL 480
                                   ******************************************************************87 PP
2GRAS137.91e-42485640212367
                          GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                                   +llde+v+l+s+r++vL+l++++sP++++ +  + ++n++ F++rf eal+yys+lfd+ ++++pre+e r + E+e+ gr
  evm.model.supercontig_81.125 485 NLLDETVALDSPRNAVLNLIRKISPNIFIQAIVNGSYNTPFFVTRFKEALSYYSVLFDMCDTNMPREDEMRLMFEKEFYGR 565
                                   5899***************************************************************************** PP

                          GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                                   ei+nv+aceg+ r+er et+++W+ r  +aGF++++l+ + + + k+ ++  + + ++v+e+ g++++gWk+r +
  evm.model.supercontig_81.125 566 EIMNVIACEGNGRVERPETYKQWQGRNLRAGFRQLTLDPELMRKFKCKVKDGYHNDFMVDEDGGWMLQGWKGRVV 640
                                   ***************************************************99888****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.933309627IPR005202Transcription factor GRAS
PfamPF035143.4E-44335480IPR005202Transcription factor GRAS
PfamPF035143.6E-40485640IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MDPQFNGYFN SMEGFTFDSE TVLKYISEVL MDEDIEEKPC MFHDALALQA AEKSLYEVIG  60
EKYPPSPDQP HIYGNQTVDS PDDCYSSGFS DSSTNCHSSP STSTSFDSQS TGNLVEHQPS  120
WLQTPVPPNF VFGSAANSSQ ESSFNSADNV SYHGNGLVAS SVNELLDKNL FNESDSMLQF  180
QRGVEEGSKF LPKGNQLIID LEGYRPAAES KDKAPNVVIE TEQYERELSP NQVIGKKSHE  240
REDEDLEDGR SSKQSAVYAD ESELSEMFDK LLLFGGGNEQ PRACFLHYSP NQGVPKTLVQ  300
NDSSKTLQKN GLTNGSGGGK SRGKKSGRNE EVVDLRTLLI LCSHAVAAND RRAANELLKQ  360
ISQHSSSVGD GSQRLAHYFA NSLEARLAGT GTQIYTALSS KRNSAVLMLK AYQTYISSCP  420
FMKIAIIFAN HTILSAAEKA TTLHIIDFGI SYGYKWPALI HRLSMRPGGP PKLRITGIEL  480
STKWNLLDET VALDSPRNAV LNLIRKISPN IFIQAIVNGS YNTPFFVTRF KEALSYYSVL  540
FDMCDTNMPR EDEMRLMFEK EFYGREIMNV IACEGNGRVE RPETYKQWQG RNLRAGFRQL  600
TLDPELMRKF KCKVKDGYHN DFMVDEDGGW MLQGWKGRVV GILVFSNLTE RAVWDLEAVQ  660
ICKFSGDFLI AAIEHPTRFQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-373186521381Protein SCARECROW
5b3h_D3e-373186521381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_81.125
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894505.10.0LOW QUALITY PROTEIN: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1Z2340.0A0A2K1Z234_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_81.1250.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]