PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_81.123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 150aa MW: 17731.5 Da PI: 8.4686 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 136.7 | 2.5e-42 | 2 | 143 | 232 | 373 |
GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 ++++P+++v+ + +n++ F++rf eal ++salfd ++a+lpre+ +r ++Ere+ gre++nv+aceg er+er e++ evm.model.supercontig_81.123 2 REINPDIFVHNIVNGAYNAPFFVTRFKEALFHFSALFDKFDATLPREDPARLMLEREFYGREVMNVIACEGLERVERPENY 82 89******************************************************************************* PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++W+ r+++aGFk++pl+++ +k+ ++ lr ++ + + ++e+ ++++gWk+r +++ S+W evm.model.supercontig_81.123 83 KQWQIRVMRAGFKQLPLDQELMKKFRAKLRACYHKDFVIDEDGSWFLQGWKGRIVYASSCW 143 *********************************889************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 25.517 | 1 | 124 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.4E-40 | 2 | 143 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MREINPDIFV HNIVNGAYNA PFFVTRFKEA LFHFSALFDK FDATLPREDP ARLMLEREFY 60 GREVMNVIAC EGLERVERPE NYKQWQIRVM RAGFKQLPLD QELMKKFRAK LRACYHKDFV 120 IDEDGSWFLQ GWKGRIVYAS SCWVPVKES* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_81.123 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894473.1 | 1e-108 | scarecrow-like protein 34 | ||||
Swissprot | Q3EDH0 | 8e-70 | SCL31_ARATH; Scarecrow-like protein 31 | ||||
TrEMBL | A0A2N9G5S7 | 7e-81 | A0A2N9G5S7_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_81.123 | 1e-108 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 | Representative plant | OGRP18124 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07520.1 | 3e-72 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_81.123 |