PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_81.11

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 243aa MW: 26828.3 Da PI: 6.1533

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_81.11	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	8.7e-11	86	132	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL +l + +s+K++K+ iL +Av+ +++L evm.model.supercontig_81.11 86 KACREKMRRDRLNDRFLELSYVLDPG---RSPKVDKSLILVEAVRMVNQL 132 678***************999998...9**************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.1	81	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-8	85	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.23E-8	85	137	No hit	No description
SuperFamily	SSF47459	4.84E-12	87	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-6	87	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-10	88	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MVSPENPNWV FDYALLEDIS VPGGDLPSLD PPGVLWSSHS FSTGSATDAN PHSVEFNDSL 60 RNSDGLKEAG SRKRVRPESC SSSGSKACRE KMRRDRLNDR FLELSYVLDP GRSPKVDKSL 120 ILVEAVRMVN QLRDEARKLE ELNQDLQEKV NELKAEKNEL RDEKQRLKTD KESLERQVKA 180 LGSQPGFLPH LPAIAAPFSA PAQVVGGKLV PFVSYPGVSM WQFMPPAAVD TSQDHVLRPP 240 VA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_81.11

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894443.1	1e-177	transcription factor bHLH115-like
Swissprot	Q9C682	2e-85	BH115_ARATH; Transcription factor bHLH115
TrEMBL	A0A2P5ERJ7	1e-122	A0A2P5ERJ7_TREOI; Basic helix-loop-helix transcription factor
STRING	evm.model.supercontig_81.11	1e-176	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90
Representative plant	OGRP755	17	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	5e-87	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_81.11

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]