PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_81.106
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 340aa    MW: 36552.5 Da    PI: 5.0937
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_81.106genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like955.8e-30166219155
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                   +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  evm.model.supercontig_81.106 166 RPRLVWTPQLHKRFVDVVTHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 219
                                   59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-19163223IPR009057Homeodomain-like
PROSITE profilePS512949.607163222IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-30165224IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-23167219IPR006447Myb domain, plants
PfamPF002492.6E-7169218IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGEEVKISEY EANGDGDGES ERVLEWEMGL PTADDLTPLS QSLIPPELAS AFSISPEPLR  60
TVVDVNRESQ GTISTLRGGS GGENGFNGAA GLTNGFSTNN NFKSYVETRD MEVVGEAEEE  120
DKAGSGCGGG GSDARKLRRT DSAAEEADSA ARTAGEEDQA ARTLKRPRLV WTPQLHKRFV  180
DVVTHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY LKRMQGFSSD GQSSTDHLFA  240
STPVQPQSLH DSGGGIHGNG GHMPMPIQMP YGAPMMPMPV FGHMGMQVGN QGAMGYHDHY  300
NQGGGFEPNP YMLQQKDWSG NKYGSMASYP HVSGRASDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-35166222157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_81.106
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894541.10.0transcription factor LUX
RefseqXP_021894542.10.0transcription factor LUX
RefseqXP_021894543.10.0transcription factor LUX
RefseqXP_021894544.10.0transcription factor LUX
SwissprotQ9SNB41e-104PCL1_ARATH; Transcription factor LUX
TrEMBLA0A2I0HU761e-129A0A2I0HU76_PUNGR; Uncharacterized protein
STRINGevm.model.supercontig_81.1060.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-96G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]