PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_807.4

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WRKY

Protein Properties

Length: 187aa MW: 21636.2 Da PI: 9.4137

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_807.4	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.6	1.1e-32	107	165	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+++fprsYY+Ct++gC+vkk+v+rs+ d+++v++tYeg H+h+ evm.model.supercontig_807.4 107 LDDGYRWRKYGQKTVKNNKFPRSYYKCTYKGCNVKKQVQRSSIDEQIVVTTYEGIHTHS 165 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.3E-33	92	166	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-29	99	166	IPR003657	WRKY domain
PROSITE profile	PS50811	29.838	102	167	IPR003657	WRKY domain
SMART	SM00774	3.7E-38	107	166	IPR003657	WRKY domain
Pfam	PF03106	8.9E-27	108	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEKYQILFPD SSASSSFPCS LMNMASPHTG YNILHGDDQG MKKMNNITRA DDQDLDAKKT 60 IYDESTSNGG SGDSEGDRVR IVSEKKKKKE SRRHRYAFQT RSQIDILDDG YRWRKYGQKT 120 VKNNKFPRSY YKCTYKGCNV KKQVQRSSID EQIVVTTYEG IHTHSTQKLD ENFEEILRQI 180 HMHTTF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-29	97	164	7	74	Probable WRKY transcription factor 4
2lex_A	4e-29	97	164	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_807.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900672.1	1e-139	probable WRKY transcription factor 75
TrEMBL	A0A061G019	2e-55	A0A061G019_THECC; WRKY-type DNA binding protein 1
STRING	evm.model.supercontig_807.4	1e-138	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-49	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_807.4