PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_80.94 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 353aa MW: 38707.5 Da PI: 8.0682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.6e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgy evm.model.supercontig_80.94 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGY 95 79****************************.88***************988899**************************** PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+dk+vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl evm.model.supercontig_80.94 96 WKATGTDKPVLTSgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 ***********9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-65 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.051 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MESTDSSAGS RQPQLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLADNKTNNK PPGCIDLGNR KNSLRLDDWV LCRIYKKNNT 180 NRPMDHDKED SMDDMLGPIL PSISVGCNGK LHLPTKSIGY GSLLDNDQNL FEGMISNDGI 240 NNGTAMSQLE SSSSKAELSG LSAKRTLPSL YWADEEPGGG PSTSKKFHGD INDGGINGRE 300 EVDNGNGSVV TLLSQLQPQN NTSLHPSQSM LGFMADGIFR PPFQLPGLNW YS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-74 | 12 | 180 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-74 | 12 | 180 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-74 | 12 | 180 | 14 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_80.94 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894723.1 | 0.0 | NAC transcription factor 56 | ||||
Refseq | XP_021894724.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-124 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A061F818 | 0.0 | A0A061F818_THECC; NAC domain protein, IPR003441 | ||||
STRING | evm.model.supercontig_80.94 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-122 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_80.94 |
Publications ? help Back to Top | |||
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