PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_80.18
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 268aa    MW: 30647.8 Da    PI: 5.5009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_80.18genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.44.1e-2161223128
                          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                   Gf+F P+deel  + L  k++g+       ++evd y+ ePw      k+e +  y F++ +kk  +++r +r +  g+Wk
  evm.model.supercontig_80.18   6 IGFHFTPSDEELF-QILGTKLRGEYEG--GGVTEVDPYEKEPWLVF-D-KNEPTTFYVFTSLKKK--SKTRMERRVGCGTWK 80 
                                  6***********9.88******99844..46************995.2.2344455666666665..567999999****** PP

                          NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +  e+++ ++++vg kk+L+f  ++++++e+ +W+mhey+l
  evm.model.supercontig_80.18  81 MERS-LEIVDWDENVVGFKKMLTFE-EKKKNTENGRWIMHEYSL 122
                                  8876.667777*************8.5666779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.5574136IPR003441NAC domain
SuperFamilySSF1019411.22E-236136IPR003441NAC domain
PfamPF023653.1E-146122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDFARIGFHF TPSDEELFQI LGTKLRGEYE GGGVTEVDPY EKEPWLVFDK NEPTTFYVFT  60
SLKKKSKTRM ERRVGCGTWK MERSLEIVDW DENVVGFKKM LTFEEKKKNT ENGRWIMHEY  120
SLRDSDDYVL CKIRNKNLDK RQQSIRIKLV YHQQDNDNNV RKRKLNVDAE DHTQYKIQCI  180
NSSFVIPTTN DTRTVEEMAI TAPLAIGNID PLVTAAPLAV GDINPLATAT PLAPEYNDGE  240
IVEGMTVAAP SQEEINCGMR LNRKTIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_80.18
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911077.11e-142NAC domain-containing protein 55-like, partial
STRINGevm.model.supercontig_80.180.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-15NAC family protein