PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_80.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 111aa MW: 12372.6 Da PI: 11.5589 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17 | 1e-05 | 37 | 53 | 39 | 55 |
S-HHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRake 55 ++ +qV +WFqNrR+ evm.model.supercontig_80.16 37 VQFKQVWNWFQNRRYAI 53 6669**********965 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 1 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.859 | 1 | 56 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-8 | 7 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MEAILQQHNN AMPLRDILVG LAERFSESAD RKGKIAVQFK QVWNWFQNRR YAIRAKSSKA 60 PGKLNVSSMP RDDPPLVRNM PQPLVAPIPT PMPAHMPAQI PAPSVIRILI * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_80.16 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894735.1 | 2e-70 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Refseq | XP_021894736.1 | 1e-70 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Swissprot | Q8RWJ7 | 1e-39 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A061FF91 | 6e-45 | A0A061FF91_THECC; DNA binding protein, putative | ||||
STRING | evm.model.supercontig_80.16 | 4e-74 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33810 | 2 | 2 | Representative plant | OGRP1641 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-42 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_80.16 |