PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_80.14
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 513aa    MW: 59262.2 Da    PI: 5.1771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_80.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.12e-201832993128
                          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                   Gf+F P+deel  + L+ k++g+       ++evd y+ ePw      k+e +  y F++ +kk  +++r +r +  g+Wk
  evm.model.supercontig_80.14 183 IGFHFTPNDEELF-QILEMKLRGEYEG--GGVTEVDPYEKEPWLVF-D-KNEPTTFYVFTSLKKK--SKTRMERRVGCGTWK 257
                                  6***********9.88******99944..46************995.2.2344455666666665..567999999****** PP

                          NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     +  ev++ ++++vg kk+L f   +++++e+ +W+mhey+l
  evm.model.supercontig_80.14 258 MERSL-EVVDWEENVVGFKKMLRFE-DKKKNTENGRWIMHEYSL 299
                                  88775.55566999**********8.6777779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF167193.4E-4010129IPR032001SAWADEE domain
SuperFamilySSF1019414.84E-23175313IPR003441NAC domain
PROSITE profilePS5100523.053181313IPR003441NAC domain
PfamPF023651.0E-13183299IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVRSASESSY LEFEAKSARD GAWYDVQMFL SHRNLDAGDP EVQVRFAGFG PEEDEWVNVK  60
KHVRQRSLPC EAAECVAVLP GDLILCFQEG KDQALYFDAH VLDAQRRRHD VRGCRCRFLV  120
RYDHDQTERM GCKKGVRERE IRRARERERE RERKKRKKDE NKRIRSRFVR VYELRMVMDV  180
ARIGFHFTPN DEELFQILEM KLRGEYEGGG VTEVDPYEKE PWLVFDKNEP TTFYVFTSLK  240
KKSKTRMERR VGCGTWKMER SLEVVDWEEN VVGFKKMLRF EDKKKNTENG RWIMHEYSLR  300
DSDDYVLCKI RNKNIDKLQQ PTKIKSVYHQ RDNNNTQKRK LNATPLAAGD INPLANAAPL  360
VSEYNDGEIA EEMTITAPIA AENINPLTTA TPLAAEFNDK EIVEEMIVAA SLVVGNINPL  420
ATTALLTAEY NDRKIVEEMI VVSPLAMGDI NPLAIAAPLA TEYNDGEIVE EMIVAAPLQK  480
EVERNENFAV DIDELWKEIE QKDNVTVDRE EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-4081281121SHH1 SAWADEE
4iur_B1e-4081281121SHH1 SAWADEE
4iut_A1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-4081281121SAWADEE HOMEODOMAIN HOMOLOG 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142154RARERERERERKK
2146157RERERERKKRKK
3148157RERERKKRKK
4152158RKKRKKD
5153157KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_80.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911077.11e-140NAC domain-containing protein 55-like, partial
STRINGevm.model.supercontig_80.140.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.27e-65sequence-specific DNA binding transcription factors;sequence-specific DNA binding